Results 101 - 120 of 269 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33468 | 5' | -62 | NC_007605.1 | + | 158205 | 0.68 | 0.603293 |
Target: 5'- gGGGACugacaCCGGGccGCCgGGGUCCCuCCg -3' miRNA: 3'- gCUCUG-----GGCUCacCGGgCCUAGGG-GG- -5' |
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33468 | 5' | -62 | NC_007605.1 | + | 159617 | 0.68 | 0.603293 |
Target: 5'- gGGGACCCGAG-GGCCUuaGAggCCCa -3' miRNA: 3'- gCUCUGGGCUCaCCGGGc-CUagGGGg -5' |
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33468 | 5' | -62 | NC_007605.1 | + | 1053 | 0.68 | 0.603293 |
Target: 5'- gGGGGCUgGGG-GGCCgCGGGggaaggccacgCCCCCu -3' miRNA: 3'- gCUCUGGgCUCaCCGG-GCCUa----------GGGGG- -5' |
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33468 | 5' | -62 | NC_007605.1 | + | 1576 | 0.68 | 0.603293 |
Target: 5'- gGGGGCUgGGG-GGCCgCGGGggaaggccacgCCCCCu -3' miRNA: 3'- gCUCUGGgCUCaCCGG-GCCUa----------GGGGG- -5' |
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33468 | 5' | -62 | NC_007605.1 | + | 83825 | 0.68 | 0.621525 |
Target: 5'- gGAGGCCCGcggcaGGaGGCCCcgcggcaGGAggCCCCg -3' miRNA: 3'- gCUCUGGGC-----UCaCCGGG-------CCUagGGGG- -5' |
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33468 | 5' | -62 | NC_007605.1 | + | 158311 | 0.68 | 0.593722 |
Target: 5'- aGAGggaaggcgacucGCCCGGGcuGCCgGGGUCCCuCCg -3' miRNA: 3'- gCUC------------UGGGCUCacCGGgCCUAGGG-GG- -5' |
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33468 | 5' | -62 | NC_007605.1 | + | 152514 | 0.68 | 0.57466 |
Target: 5'- uGGGACCCGGGgaGGCaCCcugaGGUgCCCCu -3' miRNA: 3'- gCUCUGGGCUCa-CCG-GGc---CUAgGGGG- -5' |
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33468 | 5' | -62 | NC_007605.1 | + | 57048 | 0.68 | 0.584176 |
Target: 5'- gGGGACgUGGG-GGCaCUGGAUCCCg- -3' miRNA: 3'- gCUCUGgGCUCaCCG-GGCCUAGGGgg -5' |
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33468 | 5' | -62 | NC_007605.1 | + | 33797 | 0.68 | 0.584176 |
Target: 5'- aGGGGCCCGAGguUGGagccagcgggcaCCCGaGGUCCCa- -3' miRNA: 3'- gCUCUGGGCUC--ACC------------GGGC-CUAGGGgg -5' |
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33468 | 5' | -62 | NC_007605.1 | + | 30728 | 0.68 | 0.584176 |
Target: 5'- aGGGGCCCGAGguUGGagccagcgggcaCCCGaGGUCCCa- -3' miRNA: 3'- gCUCUGGGCUC--ACC------------GGGC-CUAGGGgg -5' |
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33468 | 5' | -62 | NC_007605.1 | + | 27659 | 0.68 | 0.584176 |
Target: 5'- aGGGGCCCGAGguUGGagccagcgggcaCCCGaGGUCCCa- -3' miRNA: 3'- gCUCUGGGCUC--ACC------------GGGC-CUAGGGgg -5' |
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33468 | 5' | -62 | NC_007605.1 | + | 24590 | 0.68 | 0.584176 |
Target: 5'- aGGGGCCCGAGguUGGagccagcgggcaCCCGaGGUCCCa- -3' miRNA: 3'- gCUCUGGGCUC--ACC------------GGGC-CUAGGGgg -5' |
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33468 | 5' | -62 | NC_007605.1 | + | 21521 | 0.68 | 0.584176 |
Target: 5'- aGGGGCCCGAGguUGGagccagcgggcaCCCGaGGUCCCa- -3' miRNA: 3'- gCUCUGGGCUC--ACC------------GGGC-CUAGGGgg -5' |
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33468 | 5' | -62 | NC_007605.1 | + | 18452 | 0.68 | 0.584176 |
Target: 5'- aGGGGCCCGAGguUGGagccagcgggcaCCCGaGGUCCCa- -3' miRNA: 3'- gCUCUGGGCUC--ACC------------GGGC-CUAGGGgg -5' |
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33468 | 5' | -62 | NC_007605.1 | + | 15383 | 0.68 | 0.584176 |
Target: 5'- aGGGGCCCGAGguUGGagccagcgggcaCCCGaGGUCCCa- -3' miRNA: 3'- gCUCUGGGCUC--ACC------------GGGC-CUAGGGgg -5' |
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33468 | 5' | -62 | NC_007605.1 | + | 12314 | 0.68 | 0.584176 |
Target: 5'- aGGGGCCCGAGguUGGagccagcgggcaCCCGaGGUCCCa- -3' miRNA: 3'- gCUCUGGGCUC--ACC------------GGGC-CUAGGGgg -5' |
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33468 | 5' | -62 | NC_007605.1 | + | 126084 | 0.68 | 0.57466 |
Target: 5'- -cGGGCCCGGacccGGCCCGGAgacugguggCCCUCc -3' miRNA: 3'- gcUCUGGGCUca--CCGGGCCUa--------GGGGG- -5' |
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33468 | 5' | -62 | NC_007605.1 | + | 146376 | 0.68 | 0.57466 |
Target: 5'- uGGGACCCGGGgaGGCaCCcugaGGUgCCCCu -3' miRNA: 3'- gCUCUGGGCUCa-CCG-GGc---CUAgGGGG- -5' |
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33468 | 5' | -62 | NC_007605.1 | + | 8607 | 0.68 | 0.57466 |
Target: 5'- gGGGACCCugcagGAGgGGaCCUGGGaCCCCUg -3' miRNA: 3'- gCUCUGGG-----CUCaCC-GGGCCUaGGGGG- -5' |
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33468 | 5' | -62 | NC_007605.1 | + | 142966 | 0.68 | 0.593722 |
Target: 5'- aGAGggaaggcgacucGCCCGGGcuGCCgGGGUCCCuCCg -3' miRNA: 3'- gCUC------------UGGGCUCacCGGgCCUAGGG-GG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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