Results 1 - 20 of 269 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33468 | 5' | -62 | NC_007605.1 | + | 13184 | 1.1 | 0.001011 |
Target: 5'- cCGAGACCCGAGUGGCCCGGAUCCCCCc -3' miRNA: 3'- -GCUCUGGGCUCACCGGGCCUAGGGGG- -5' |
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33468 | 5' | -62 | NC_007605.1 | + | 34667 | 1.1 | 0.001011 |
Target: 5'- cCGAGACCCGAGUGGCCCGGAUCCCCCc -3' miRNA: 3'- -GCUCUGGGCUCACCGGGCCUAGGGGG- -5' |
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33468 | 5' | -62 | NC_007605.1 | + | 31598 | 1.1 | 0.001011 |
Target: 5'- cCGAGACCCGAGUGGCCCGGAUCCCCCc -3' miRNA: 3'- -GCUCUGGGCUCACCGGGCCUAGGGGG- -5' |
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33468 | 5' | -62 | NC_007605.1 | + | 28529 | 1.1 | 0.001011 |
Target: 5'- cCGAGACCCGAGUGGCCCGGAUCCCCCc -3' miRNA: 3'- -GCUCUGGGCUCACCGGGCCUAGGGGG- -5' |
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33468 | 5' | -62 | NC_007605.1 | + | 25460 | 1.1 | 0.001011 |
Target: 5'- cCGAGACCCGAGUGGCCCGGAUCCCCCc -3' miRNA: 3'- -GCUCUGGGCUCACCGGGCCUAGGGGG- -5' |
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33468 | 5' | -62 | NC_007605.1 | + | 22391 | 1.1 | 0.001011 |
Target: 5'- cCGAGACCCGAGUGGCCCGGAUCCCCCc -3' miRNA: 3'- -GCUCUGGGCUCACCGGGCCUAGGGGG- -5' |
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33468 | 5' | -62 | NC_007605.1 | + | 19322 | 1.1 | 0.001011 |
Target: 5'- cCGAGACCCGAGUGGCCCGGAUCCCCCc -3' miRNA: 3'- -GCUCUGGGCUCACCGGGCCUAGGGGG- -5' |
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33468 | 5' | -62 | NC_007605.1 | + | 16253 | 1.1 | 0.001011 |
Target: 5'- cCGAGACCCGAGUGGCCCGGAUCCCCCc -3' miRNA: 3'- -GCUCUGGGCUCACCGGGCCUAGGGGG- -5' |
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33468 | 5' | -62 | NC_007605.1 | + | 34902 | 0.81 | 0.105439 |
Target: 5'- aGGGACCCcGGcGGCCCGGugucaGUCCCCCu -3' miRNA: 3'- gCUCUGGGcUCaCCGGGCC-----UAGGGGG- -5' |
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33468 | 5' | -62 | NC_007605.1 | + | 122224 | 0.8 | 0.119239 |
Target: 5'- aGAGACaCUGGGUgacGGCCCGGGUCCUCUc -3' miRNA: 3'- gCUCUG-GGCUCA---CCGGGCCUAGGGGG- -5' |
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33468 | 5' | -62 | NC_007605.1 | + | 31833 | 0.8 | 0.116351 |
Target: 5'- aGGGACCCcGGcGGCCCGGugucaGUCCCCCc -3' miRNA: 3'- gCUCUGGGcUCaCCGGGCC-----UAGGGGG- -5' |
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33468 | 5' | -62 | NC_007605.1 | + | 28764 | 0.8 | 0.116351 |
Target: 5'- aGGGACCCcGGcGGCCCGGugucaGUCCCCCc -3' miRNA: 3'- gCUCUGGGcUCaCCGGGCC-----UAGGGGG- -5' |
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33468 | 5' | -62 | NC_007605.1 | + | 25695 | 0.8 | 0.116351 |
Target: 5'- aGGGACCCcGGcGGCCCGGugucaGUCCCCCc -3' miRNA: 3'- gCUCUGGGcUCaCCGGGCC-----UAGGGGG- -5' |
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33468 | 5' | -62 | NC_007605.1 | + | 22626 | 0.8 | 0.116351 |
Target: 5'- aGGGACCCcGGcGGCCCGGugucaGUCCCCCc -3' miRNA: 3'- gCUCUGGGcUCaCCGGGCC-----UAGGGGG- -5' |
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33468 | 5' | -62 | NC_007605.1 | + | 19557 | 0.8 | 0.116351 |
Target: 5'- aGGGACCCcGGcGGCCCGGugucaGUCCCCCc -3' miRNA: 3'- gCUCUGGGcUCaCCGGGCC-----UAGGGGG- -5' |
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33468 | 5' | -62 | NC_007605.1 | + | 16488 | 0.8 | 0.116351 |
Target: 5'- aGGGACCCcGGcGGCCCGGugucaGUCCCCCc -3' miRNA: 3'- gCUCUGGGcUCaCCGGGCC-----UAGGGGG- -5' |
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33468 | 5' | -62 | NC_007605.1 | + | 13419 | 0.8 | 0.116351 |
Target: 5'- aGGGACCCcGGcGGCCCGGugucaGUCCCCCc -3' miRNA: 3'- gCUCUGGGcUCaCCGGGCC-----UAGGGGG- -5' |
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33468 | 5' | -62 | NC_007605.1 | + | 121714 | 0.76 | 0.231914 |
Target: 5'- cCGGcGACCU-AGUGGUccccuCCGGAUCCCCCu -3' miRNA: 3'- -GCU-CUGGGcUCACCG-----GGCCUAGGGGG- -5' |
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33468 | 5' | -62 | NC_007605.1 | + | 61308 | 0.75 | 0.264954 |
Target: 5'- aGAGACCUGAG-GaGUUCGGAugaaaggUCCCCCg -3' miRNA: 3'- gCUCUGGGCUCaC-CGGGCCU-------AGGGGG- -5' |
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33468 | 5' | -62 | NC_007605.1 | + | 44199 | 0.75 | 0.23726 |
Target: 5'- uGAGGCCCGAGgcacggaagagGGCCgGGAuggguacauuUUCCCCa -3' miRNA: 3'- gCUCUGGGCUCa----------CCGGgCCU----------AGGGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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