miRNA display CGI


Results 21 - 40 of 269 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33468 5' -62 NC_007605.1 + 61308 0.75 0.264954
Target:  5'- aGAGACCUGAG-GaGUUCGGAugaaaggUCCCCCg -3'
miRNA:   3'- gCUCUGGGCUCaC-CGGGCCU-------AGGGGG- -5'
33468 5' -62 NC_007605.1 + 142165 0.74 0.283794
Target:  5'- gGGGGCggCCGGGUGGCCCaccGGGUCCgCUg -3'
miRNA:   3'- gCUCUG--GGCUCACCGGG---CCUAGGgGG- -5'
33468 5' -62 NC_007605.1 + 142267 0.74 0.283794
Target:  5'- gGGGGCggCCGGGUGGCCCaccGGGUCCgCUg -3'
miRNA:   3'- gCUCUG--GGCUCACCGGG---CCUAGGgGG- -5'
33468 5' -62 NC_007605.1 + 142369 0.74 0.283794
Target:  5'- gGGGGCggCCGGGUGGCCCaccGGGUCCgCUg -3'
miRNA:   3'- gCUCUG--GGCUCACCGGG---CCUAGGgGG- -5'
33468 5' -62 NC_007605.1 + 142471 0.74 0.283794
Target:  5'- gGGGGCggCCGGGUGGCCCaccGGGUCCgCUg -3'
miRNA:   3'- gCUCUG--GGCUCACCGGG---CCUAGGgGG- -5'
33468 5' -62 NC_007605.1 + 142573 0.74 0.283794
Target:  5'- gGGGGCggCCGGGUGGCCCaccGGGUCCgCUg -3'
miRNA:   3'- gCUCUG--GGCUCACCGGG---CCUAGGgGG- -5'
33468 5' -62 NC_007605.1 + 142675 0.74 0.283794
Target:  5'- gGGGGCggCCGGGUGGCCCaccGGGUCCgCUg -3'
miRNA:   3'- gCUCUG--GGCUCACCGGG---CCUAGGgGG- -5'
33468 5' -62 NC_007605.1 + 142776 0.74 0.283794
Target:  5'- gGGGGCggCCGGGUGGCCCaccGGGUCCgCUg -3'
miRNA:   3'- gCUCUG--GGCUCACCGGG---CCUAGGgGG- -5'
33468 5' -62 NC_007605.1 + 142878 0.74 0.283794
Target:  5'- gGGGGCggCCGGGUGGCCCaccGGGUCCgCUg -3'
miRNA:   3'- gCUCUG--GGCUCACCGGG---CCUAGGgGG- -5'
33468 5' -62 NC_007605.1 + 141859 0.74 0.283794
Target:  5'- gGGGGCggCCGGGUGGCCCaccGGGUCCgCUg -3'
miRNA:   3'- gCUCUG--GGCUCACCGGG---CCUAGGgGG- -5'
33468 5' -62 NC_007605.1 + 141757 0.74 0.283794
Target:  5'- gGGGGCggCCGGGUGGCCCaccGGGUCCgCUg -3'
miRNA:   3'- gCUCUG--GGCUCACCGGG---CCUAGGgGG- -5'
33468 5' -62 NC_007605.1 + 140942 0.74 0.283794
Target:  5'- gGGGGCggCCGGGUGGCCCaccGGGUCCgCUg -3'
miRNA:   3'- gCUCUG--GGCUCACCGGG---CCUAGGgGG- -5'
33468 5' -62 NC_007605.1 + 141044 0.74 0.283794
Target:  5'- gGGGGCggCCGGGUGGCCCaccGGGUCCgCUg -3'
miRNA:   3'- gCUCUG--GGCUCACCGGG---CCUAGGgGG- -5'
33468 5' -62 NC_007605.1 + 141146 0.74 0.283794
Target:  5'- gGGGGCggCCGGGUGGCCCaccGGGUCCgCUg -3'
miRNA:   3'- gCUCUG--GGCUCACCGGG---CCUAGGgGG- -5'
33468 5' -62 NC_007605.1 + 141248 0.74 0.283794
Target:  5'- gGGGGCggCCGGGUGGCCCaccGGGUCCgCUg -3'
miRNA:   3'- gCUCUG--GGCUCACCGGG---CCUAGGgGG- -5'
33468 5' -62 NC_007605.1 + 141350 0.74 0.283794
Target:  5'- gGGGGCggCCGGGUGGCCCaccGGGUCCgCUg -3'
miRNA:   3'- gCUCUG--GGCUCACCGGG---CCUAGGgGG- -5'
33468 5' -62 NC_007605.1 + 141452 0.74 0.283794
Target:  5'- gGGGGCggCCGGGUGGCCCaccGGGUCCgCUg -3'
miRNA:   3'- gCUCUG--GGCUCACCGGG---CCUAGGgGG- -5'
33468 5' -62 NC_007605.1 + 141554 0.74 0.283794
Target:  5'- gGGGGCggCCGGGUGGCCCaccGGGUCCgCUg -3'
miRNA:   3'- gCUCUG--GGCUCACCGGG---CCUAGGgGG- -5'
33468 5' -62 NC_007605.1 + 141656 0.74 0.283794
Target:  5'- gGGGGCggCCGGGUGGCCCaccGGGUCCgCUg -3'
miRNA:   3'- gCUCUG--GGCUCACCGGG---CCUAGGgGG- -5'
33468 5' -62 NC_007605.1 + 140840 0.74 0.283794
Target:  5'- gGGGGCggCCGGGUGGCCCaccGGGUCCgCUg -3'
miRNA:   3'- gCUCUG--GGCUCACCGGG---CCUAGGgGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.