Results 101 - 120 of 269 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33468 | 5' | -62 | NC_007605.1 | + | 32972 | 0.7 | 0.464643 |
Target: 5'- -aAGGCCCuGGaccaacccGGCCCGGGcCCCCCg -3' miRNA: 3'- gcUCUGGGcUCa-------CCGGGCCUaGGGGG- -5' |
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33468 | 5' | -62 | NC_007605.1 | + | 23766 | 0.7 | 0.464643 |
Target: 5'- -aAGGCCCuGGaccaacccGGCCCGGGcCCCCCg -3' miRNA: 3'- gcUCUGGGcUCa-------CCGGGCCUaGGGGG- -5' |
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33468 | 5' | -62 | NC_007605.1 | + | 152477 | 0.7 | 0.482287 |
Target: 5'- gGGGccGCCCGGGcuGCCgGGGUCCCuCCg -3' miRNA: 3'- gCUC--UGGGCUCacCGGgCCUAGGG-GG- -5' |
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33468 | 5' | -62 | NC_007605.1 | + | 140201 | 0.7 | 0.482287 |
Target: 5'- gGGGccGCCCGGGcuGCCgGGGUCCCuCCg -3' miRNA: 3'- gCUC--UGGGCUCacCGGgCCUAGGG-GG- -5' |
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33468 | 5' | -62 | NC_007605.1 | + | 143270 | 0.7 | 0.482287 |
Target: 5'- gGGGccGCCCGGGcuGCCgGGGUCCCuCCg -3' miRNA: 3'- gCUC--UGGGCUCacCGGgCCUAGGG-GG- -5' |
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33468 | 5' | -62 | NC_007605.1 | + | 146339 | 0.7 | 0.482287 |
Target: 5'- gGGGccGCCCGGGcuGCCgGGGUCCCuCCg -3' miRNA: 3'- gCUC--UGGGCUCacCGGgCCUAGGG-GG- -5' |
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33468 | 5' | -62 | NC_007605.1 | + | 149408 | 0.7 | 0.482287 |
Target: 5'- gGGGccGCCCGGGcuGCCgGGGUCCCuCCg -3' miRNA: 3'- gCUC--UGGGCUCacCGGgCCUAGGG-GG- -5' |
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33468 | 5' | -62 | NC_007605.1 | + | 155546 | 0.7 | 0.482287 |
Target: 5'- gGGGccGCCCGGGcuGCCgGGGUCCCuCCg -3' miRNA: 3'- gCUC--UGGGCUCacCGGgCCUAGGG-GG- -5' |
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33468 | 5' | -62 | NC_007605.1 | + | 158615 | 0.7 | 0.482287 |
Target: 5'- gGGGccGCCCGGGcuGCCgGGGUCCCuCCg -3' miRNA: 3'- gCUC--UGGGCUCacCGGgCCUAGGG-GG- -5' |
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33468 | 5' | -62 | NC_007605.1 | + | 137132 | 0.7 | 0.482287 |
Target: 5'- gGGGccGCCCGGGcuGCCgGGGUCCCuCCg -3' miRNA: 3'- gCUC--UGGGCUCacCGGgCCUAGGG-GG- -5' |
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33468 | 5' | -62 | NC_007605.1 | + | 8956 | 0.7 | 0.49123 |
Target: 5'- aGGGACCCcuaugugaucucGGG-GGCCCGGG-CUCCUa -3' miRNA: 3'- gCUCUGGG------------CUCaCCGGGCCUaGGGGG- -5' |
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33468 | 5' | -62 | NC_007605.1 | + | 66893 | 0.7 | 0.49123 |
Target: 5'- gCGAGACCCGAGgcagacaaGGCCCcgccAUCCCa- -3' miRNA: 3'- -GCUCUGGGCUCa-------CCGGGcc--UAGGGgg -5' |
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33468 | 5' | -62 | NC_007605.1 | + | 64273 | 0.7 | 0.501154 |
Target: 5'- gGAGACCCGAGUcucugcuuucgcgcaGaGCCCGGccuacgagcgcaucGUCUCCa -3' miRNA: 3'- gCUCUGGGCUCA---------------C-CGGGCC--------------UAGGGGg -5' |
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33468 | 5' | -62 | NC_007605.1 | + | 157064 | 0.7 | 0.506605 |
Target: 5'- gGGGGCCCGGGccggguUGGUCCaGGGccuucacuucggucUCCCCUa -3' miRNA: 3'- gCUCUGGGCUC------ACCGGG-CCU--------------AGGGGG- -5' |
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33468 | 5' | -62 | NC_007605.1 | + | 144788 | 0.7 | 0.506605 |
Target: 5'- gGGGGCCCGGGccggguUGGUCCaGGGccuucacuucggucUCCCCUa -3' miRNA: 3'- gCUCUGGGCUC------ACCGGG-CCU--------------AGGGGG- -5' |
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33468 | 5' | -62 | NC_007605.1 | + | 141719 | 0.7 | 0.506605 |
Target: 5'- gGGGGCCCGGGccggguUGGUCCaGGGccuucacuucggucUCCCCUa -3' miRNA: 3'- gCUCUGGGCUC------ACCGGG-CCU--------------AGGGGG- -5' |
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33468 | 5' | -62 | NC_007605.1 | + | 138651 | 0.7 | 0.506605 |
Target: 5'- gGGGGCCCGGGccggguUGGUCCaGGGccuucacuucggucUCCCCUa -3' miRNA: 3'- gCUCUGGGCUC------ACCGGG-CCU--------------AGGGGG- -5' |
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33468 | 5' | -62 | NC_007605.1 | + | 153995 | 0.7 | 0.506605 |
Target: 5'- gGGGGCCCGGGccggguUGGUCCaGGGccuucacuucggucUCCCCUa -3' miRNA: 3'- gCUCUGGGCUC------ACCGGG-CCU--------------AGGGGG- -5' |
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33468 | 5' | -62 | NC_007605.1 | + | 150926 | 0.7 | 0.506605 |
Target: 5'- gGGGGCCCGGGccggguUGGUCCaGGGccuucacuucggucUCCCCUa -3' miRNA: 3'- gCUCUGGGCUC------ACCGGG-CCU--------------AGGGGG- -5' |
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33468 | 5' | -62 | NC_007605.1 | + | 147857 | 0.7 | 0.506605 |
Target: 5'- gGGGGCCCGGGccggguUGGUCCaGGGccuucacuucggucUCCCCUa -3' miRNA: 3'- gCUCUGGGCUC------ACCGGG-CCU--------------AGGGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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