miRNA display CGI


Results 21 - 40 of 269 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33468 5' -62 NC_007605.1 + 34034 0.66 0.727043
Target:  5'- -uAGGCCCGgggaAGUGgagggggaucGCCCGGGUCUCUg -3'
miRNA:   3'- gcUCUGGGC----UCAC----------CGGGCCUAGGGGg -5'
33468 5' -62 NC_007605.1 + 27897 0.66 0.727043
Target:  5'- -uAGGCCCGgggaAGUGgagggggaucGCCCGGGUCUCUg -3'
miRNA:   3'- gcUCUGGGC----UCAC----------CGGGCCUAGGGGg -5'
33468 5' -62 NC_007605.1 + 111410 0.66 0.717749
Target:  5'- gGAGAgCCG-G-GGCaucgCGGAUCaCCCCc -3'
miRNA:   3'- gCUCUgGGCuCaCCGg---GCCUAG-GGGG- -5'
33468 5' -62 NC_007605.1 + 143474 0.66 0.716816
Target:  5'- aGAGGCCCGcgagauuugggguAGgcgGaGCCUcaggaGGGUCCCCUc -3'
miRNA:   3'- gCUCUGGGC-------------UCa--C-CGGG-----CCUAGGGGG- -5'
33468 5' -62 NC_007605.1 + 60925 0.66 0.708391
Target:  5'- uGAG-CUCGAGaggacggcgGGCCCGGGUCagCUCg -3'
miRNA:   3'- gCUCuGGGCUCa--------CCGGGCCUAGg-GGG- -5'
33468 5' -62 NC_007605.1 + 69920 0.66 0.698976
Target:  5'- gGAGAcguucuccCCCGAGUuuGaCCCGGAgcucucggagCCCCCc -3'
miRNA:   3'- gCUCU--------GGGCUCA--CcGGGCCUa---------GGGGG- -5'
33468 5' -62 NC_007605.1 + 114580 0.66 0.698976
Target:  5'- uCGGGAUCC-AGUGcCCCcacGUCCCCCa -3'
miRNA:   3'- -GCUCUGGGcUCACcGGGcc-UAGGGGG- -5'
33468 5' -62 NC_007605.1 + 38582 0.66 0.698976
Target:  5'- uGGGGCCCacauGAGUucggGGCCUGuGUCCCUg -3'
miRNA:   3'- gCUCUGGG----CUCA----CCGGGCcUAGGGGg -5'
33468 5' -62 NC_007605.1 + 75393 0.66 0.689512
Target:  5'- aGAGAUCUG-G-GGCCaaGGA-CCCCCg -3'
miRNA:   3'- gCUCUGGGCuCaCCGGg-CCUaGGGGG- -5'
33468 5' -62 NC_007605.1 + 12503 0.66 0.689512
Target:  5'- aCGGGGCCCcuggcggaggaGAGcgGGCUCuu-UCCCCCa -3'
miRNA:   3'- -GCUCUGGG-----------CUCa-CCGGGccuAGGGGG- -5'
33468 5' -62 NC_007605.1 + 36429 0.66 0.689512
Target:  5'- --uGGCCCGGGUGGgcuuCCCGGcagaggCCCUg -3'
miRNA:   3'- gcuCUGGGCUCACC----GGGCCua----GGGGg -5'
33468 5' -62 NC_007605.1 + 147950 0.66 0.689512
Target:  5'- gGGGACCCuGGU-GCuaGGGUCCCUUg -3'
miRNA:   3'- gCUCUGGGcUCAcCGggCCUAGGGGG- -5'
33468 5' -62 NC_007605.1 + 71796 0.67 0.680005
Target:  5'- uGAGcACCUcuGUcucaGGCaCCGGAUgCCCCCg -3'
miRNA:   3'- gCUC-UGGGcuCA----CCG-GGCCUA-GGGGG- -5'
33468 5' -62 NC_007605.1 + 115494 0.67 0.680005
Target:  5'- aGGGACaaG-GUGGCCuCGGcggCCUCCg -3'
miRNA:   3'- gCUCUGggCuCACCGG-GCCua-GGGGG- -5'
33468 5' -62 NC_007605.1 + 157370 0.67 0.670464
Target:  5'- gGGGGCCgUGGGgGGCaCCGGugugguggcGUUCCCCg -3'
miRNA:   3'- gCUCUGG-GCUCaCCG-GGCC---------UAGGGGG- -5'
33468 5' -62 NC_007605.1 + 39972 0.67 0.670464
Target:  5'- gGGGGCUgGGGU--CCCGGGacgCCCCCu -3'
miRNA:   3'- gCUCUGGgCUCAccGGGCCUa--GGGGG- -5'
33468 5' -62 NC_007605.1 + 17684 0.67 0.661854
Target:  5'- gGAGGCCCuGAGccccgccaaccugcaGGCCCuGG-CCCCCu -3'
miRNA:   3'- gCUCUGGG-CUCa--------------CCGGGcCUaGGGGG- -5'
33468 5' -62 NC_007605.1 + 29151 0.67 0.660896
Target:  5'- aGGGGucCCCGAGggugaGGCCCag--CCCCCu -3'
miRNA:   3'- gCUCU--GGGCUCa----CCGGGccuaGGGGG- -5'
33468 5' -62 NC_007605.1 + 26082 0.67 0.660896
Target:  5'- aGGGGucCCCGAGggugaGGCCCag--CCCCCu -3'
miRNA:   3'- gCUCU--GGGCUCa----CCGGGccuaGGGGG- -5'
33468 5' -62 NC_007605.1 + 16876 0.67 0.660896
Target:  5'- aGGGGucCCCGAGggugaGGCCCag--CCCCCu -3'
miRNA:   3'- gCUCU--GGGCUCa----CCGGGccuaGGGGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.