miRNA display CGI


Results 21 - 40 of 269 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33468 5' -62 NC_007605.1 + 13675 0.68 0.593722
Target:  5'- uGuGACCCuuG-GGCCUGGcUCCCCa -3'
miRNA:   3'- gCuCUGGGcuCaCCGGGCCuAGGGGg -5'
33468 5' -62 NC_007605.1 + 13807 0.67 0.660896
Target:  5'- aGGGGucCCCGAGggugaGGCCCag--CCCCCu -3'
miRNA:   3'- gCUCU--GGGCUCa----CCGGGccuaGGGGG- -5'
33468 5' -62 NC_007605.1 + 14559 0.7 0.464643
Target:  5'- -aAGGCCCuGGaccaacccGGCCCGGGcCCCCCg -3'
miRNA:   3'- gcUCUGGGcUCa-------CCGGGCCUaGGGGG- -5'
33468 5' -62 NC_007605.1 + 15005 0.69 0.56518
Target:  5'- aGAGACCCGGGcuucaGGCCCuGccUCUCCUg -3'
miRNA:   3'- gCUCUGGGCUCa----CCGGGcCu-AGGGGG- -5'
33468 5' -62 NC_007605.1 + 15081 0.66 0.727043
Target:  5'- --uGGCCUcuaaGGCCCucGGGUCCCCCu -3'
miRNA:   3'- gcuCUGGGcucaCCGGG--CCUAGGGGG- -5'
33468 5' -62 NC_007605.1 + 15383 0.68 0.584176
Target:  5'- aGGGGCCCGAGguUGGagccagcgggcaCCCGaGGUCCCa- -3'
miRNA:   3'- gCUCUGGGCUC--ACC------------GGGC-CUAGGGgg -5'
33468 5' -62 NC_007605.1 + 15621 0.66 0.727043
Target:  5'- -uAGGCCCGgggaAGUGgagggggaucGCCCGGGUCUCUg -3'
miRNA:   3'- gcUCUGGGC----UCAC----------CGGGCCUAGGGGg -5'
33468 5' -62 NC_007605.1 + 15683 0.74 0.290094
Target:  5'- uGAGACCCuccgGGCCCGGAcggucgCCCUCa -3'
miRNA:   3'- gCUCUGGGcucaCCGGGCCUa-----GGGGG- -5'
33468 5' -62 NC_007605.1 + 16081 0.69 0.56518
Target:  5'- aGGGACCCcGGcaGCCCGGGcggCCCCa -3'
miRNA:   3'- gCUCUGGGcUCacCGGGCCUa--GGGGg -5'
33468 5' -62 NC_007605.1 + 16253 1.1 0.001011
Target:  5'- cCGAGACCCGAGUGGCCCGGAUCCCCCc -3'
miRNA:   3'- -GCUCUGGGCUCACCGGGCCUAGGGGG- -5'
33468 5' -62 NC_007605.1 + 16375 0.67 0.641704
Target:  5'- aGGGACCCcGGcaGCCCGGGcgagucgccuUCCCUCu -3'
miRNA:   3'- gCUCUGGGcUCacCGGGCCU----------AGGGGG- -5'
33468 5' -62 NC_007605.1 + 16488 0.8 0.116351
Target:  5'- aGGGACCCcGGcGGCCCGGugucaGUCCCCCc -3'
miRNA:   3'- gCUCUGGGcUCaCCGGGCC-----UAGGGGG- -5'
33468 5' -62 NC_007605.1 + 16744 0.68 0.593722
Target:  5'- uGuGACCCuuG-GGCCUGGcUCCCCa -3'
miRNA:   3'- gCuCUGGGcuCaCCGGGCCuAGGGGg -5'
33468 5' -62 NC_007605.1 + 16876 0.67 0.660896
Target:  5'- aGGGGucCCCGAGggugaGGCCCag--CCCCCu -3'
miRNA:   3'- gCUCU--GGGCUCa----CCGGGccuaGGGGG- -5'
33468 5' -62 NC_007605.1 + 17628 0.7 0.464643
Target:  5'- -aAGGCCCuGGaccaacccGGCCCGGGcCCCCCg -3'
miRNA:   3'- gcUCUGGGcUCa-------CCGGGCCUaGGGGG- -5'
33468 5' -62 NC_007605.1 + 17684 0.67 0.661854
Target:  5'- gGAGGCCCuGAGccccgccaaccugcaGGCCCuGG-CCCCCu -3'
miRNA:   3'- gCUCUGGG-CUCa--------------CCGGGcCUaGGGGG- -5'
33468 5' -62 NC_007605.1 + 17869 0.68 0.612883
Target:  5'- gGAG-CCUGuuuGUGGCCCccAUCUCCCu -3'
miRNA:   3'- gCUCuGGGCu--CACCGGGccUAGGGGG- -5'
33468 5' -62 NC_007605.1 + 18074 0.69 0.56518
Target:  5'- aGAGACCCGGGcuucaGGCCCuGccUCUCCUg -3'
miRNA:   3'- gCUCUGGGCUCa----CCGGGcCu-AGGGGG- -5'
33468 5' -62 NC_007605.1 + 18150 0.66 0.727043
Target:  5'- --uGGCCUcuaaGGCCCucGGGUCCCCCu -3'
miRNA:   3'- gcuCUGGGcucaCCGGG--CCUAGGGGG- -5'
33468 5' -62 NC_007605.1 + 18452 0.68 0.584176
Target:  5'- aGGGGCCCGAGguUGGagccagcgggcaCCCGaGGUCCCa- -3'
miRNA:   3'- gCUCUGGGCUC--ACC------------GGGC-CUAGGGgg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.