Results 41 - 60 of 269 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33468 | 5' | -62 | NC_007605.1 | + | 18690 | 0.66 | 0.727043 |
Target: 5'- -uAGGCCCGgggaAGUGgagggggaucGCCCGGGUCUCUg -3' miRNA: 3'- gcUCUGGGC----UCAC----------CGGGCCUAGGGGg -5' |
|||||||
33468 | 5' | -62 | NC_007605.1 | + | 18752 | 0.74 | 0.290094 |
Target: 5'- uGAGACCCuccgGGCCCGGAcggucgCCCUCa -3' miRNA: 3'- gCUCUGGGcucaCCGGGCCUa-----GGGGG- -5' |
|||||||
33468 | 5' | -62 | NC_007605.1 | + | 19150 | 0.69 | 0.56518 |
Target: 5'- aGGGACCCcGGcaGCCCGGGcggCCCCa -3' miRNA: 3'- gCUCUGGGcUCacCGGGCCUa--GGGGg -5' |
|||||||
33468 | 5' | -62 | NC_007605.1 | + | 19322 | 1.1 | 0.001011 |
Target: 5'- cCGAGACCCGAGUGGCCCGGAUCCCCCc -3' miRNA: 3'- -GCUCUGGGCUCACCGGGCCUAGGGGG- -5' |
|||||||
33468 | 5' | -62 | NC_007605.1 | + | 19444 | 0.67 | 0.641704 |
Target: 5'- aGGGACCCcGGcaGCCCGGGcgagucgccuUCCCUCu -3' miRNA: 3'- gCUCUGGGcUCacCGGGCCU----------AGGGGG- -5' |
|||||||
33468 | 5' | -62 | NC_007605.1 | + | 19557 | 0.8 | 0.116351 |
Target: 5'- aGGGACCCcGGcGGCCCGGugucaGUCCCCCc -3' miRNA: 3'- gCUCUGGGcUCaCCGGGCC-----UAGGGGG- -5' |
|||||||
33468 | 5' | -62 | NC_007605.1 | + | 19813 | 0.68 | 0.593722 |
Target: 5'- uGuGACCCuuG-GGCCUGGcUCCCCa -3' miRNA: 3'- gCuCUGGGcuCaCCGGGCCuAGGGGg -5' |
|||||||
33468 | 5' | -62 | NC_007605.1 | + | 19945 | 0.68 | 0.612883 |
Target: 5'- aGGGGucCCCGAGgguaGGCCCag--CCCCCu -3' miRNA: 3'- gCUCU--GGGCUCa---CCGGGccuaGGGGG- -5' |
|||||||
33468 | 5' | -62 | NC_007605.1 | + | 20240 | 0.67 | 0.640743 |
Target: 5'- aCGAGGCCCuGGccGUGGCCagguacgggcuggUGGGcUCCCUCu -3' miRNA: 3'- -GCUCUGGG-CU--CACCGG-------------GCCU-AGGGGG- -5' |
|||||||
33468 | 5' | -62 | NC_007605.1 | + | 20697 | 0.7 | 0.464643 |
Target: 5'- -aAGGCCCuGGaccaacccGGCCCGGGcCCCCCg -3' miRNA: 3'- gcUCUGGGcUCa-------CCGGGCCUaGGGGG- -5' |
|||||||
33468 | 5' | -62 | NC_007605.1 | + | 21143 | 0.69 | 0.56518 |
Target: 5'- aGAGACCCGGGcuucaGGCCCuGccUCUCCUg -3' miRNA: 3'- gCUCUGGGCUCa----CCGGGcCu-AGGGGG- -5' |
|||||||
33468 | 5' | -62 | NC_007605.1 | + | 21219 | 0.66 | 0.727043 |
Target: 5'- --uGGCCUcuaaGGCCCucGGGUCCCCCu -3' miRNA: 3'- gcuCUGGGcucaCCGGG--CCUAGGGGG- -5' |
|||||||
33468 | 5' | -62 | NC_007605.1 | + | 21521 | 0.68 | 0.584176 |
Target: 5'- aGGGGCCCGAGguUGGagccagcgggcaCCCGaGGUCCCa- -3' miRNA: 3'- gCUCUGGGCUC--ACC------------GGGC-CUAGGGgg -5' |
|||||||
33468 | 5' | -62 | NC_007605.1 | + | 21759 | 0.66 | 0.727043 |
Target: 5'- -uAGGCCCGgggaAGUGgagggggaucGCCCGGGUCUCUg -3' miRNA: 3'- gcUCUGGGC----UCAC----------CGGGCCUAGGGGg -5' |
|||||||
33468 | 5' | -62 | NC_007605.1 | + | 21821 | 0.74 | 0.290094 |
Target: 5'- uGAGACCCuccgGGCCCGGAcggucgCCCUCa -3' miRNA: 3'- gCUCUGGGcucaCCGGGCCUa-----GGGGG- -5' |
|||||||
33468 | 5' | -62 | NC_007605.1 | + | 22219 | 0.69 | 0.56518 |
Target: 5'- aGGGACCCcGGcaGCCCGGGcggCCCCa -3' miRNA: 3'- gCUCUGGGcUCacCGGGCCUa--GGGGg -5' |
|||||||
33468 | 5' | -62 | NC_007605.1 | + | 22391 | 1.1 | 0.001011 |
Target: 5'- cCGAGACCCGAGUGGCCCGGAUCCCCCc -3' miRNA: 3'- -GCUCUGGGCUCACCGGGCCUAGGGGG- -5' |
|||||||
33468 | 5' | -62 | NC_007605.1 | + | 22513 | 0.67 | 0.641704 |
Target: 5'- aGGGACCCcGGcaGCCCGGGcgagucgccuUCCCUCu -3' miRNA: 3'- gCUCUGGGcUCacCGGGCCU----------AGGGGG- -5' |
|||||||
33468 | 5' | -62 | NC_007605.1 | + | 22626 | 0.8 | 0.116351 |
Target: 5'- aGGGACCCcGGcGGCCCGGugucaGUCCCCCc -3' miRNA: 3'- gCUCUGGGcUCaCCGGGCC-----UAGGGGG- -5' |
|||||||
33468 | 5' | -62 | NC_007605.1 | + | 22882 | 0.68 | 0.593722 |
Target: 5'- uGuGACCCuuG-GGCCUGGcUCCCCa -3' miRNA: 3'- gCuCUGGGcuCaCCGGGCCuAGGGGg -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home