Results 101 - 120 of 269 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33468 | 5' | -62 | NC_007605.1 | + | 29868 | 0.72 | 0.381943 |
Target: 5'- -cGGACCCG-GUGGgccaCCCGGccgCCCCCc -3' miRNA: 3'- gcUCUGGGCuCACC----GGGCCua-GGGGG- -5' |
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33468 | 5' | -62 | NC_007605.1 | + | 29904 | 0.7 | 0.464643 |
Target: 5'- -aAGGCCCuGGaccaacccGGCCCGGGcCCCCCg -3' miRNA: 3'- gcUCUGGGcUCa-------CCGGGCCUaGGGGG- -5' |
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33468 | 5' | -62 | NC_007605.1 | + | 29969 | 0.72 | 0.381943 |
Target: 5'- -cGGACCCG-GUGGgccaCCCGGccgCCCCCc -3' miRNA: 3'- gcUCUGGGCuCACC----GGGCCua-GGGGG- -5' |
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33468 | 5' | -62 | NC_007605.1 | + | 30071 | 0.72 | 0.381943 |
Target: 5'- -cGGACCCG-GUGGgccaCCCGGccgCCCCCc -3' miRNA: 3'- gcUCUGGGCuCACC----GGGCCua-GGGGG- -5' |
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33468 | 5' | -62 | NC_007605.1 | + | 30173 | 0.72 | 0.381943 |
Target: 5'- -cGGACCCG-GUGGgccaCCCGGccgCCCCCc -3' miRNA: 3'- gcUCUGGGCuCACC----GGGCCua-GGGGG- -5' |
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33468 | 5' | -62 | NC_007605.1 | + | 30275 | 0.72 | 0.381943 |
Target: 5'- -cGGACCCG-GUGGgccaCCCGGccgCCCCCc -3' miRNA: 3'- gcUCUGGGCuCACC----GGGCCua-GGGGG- -5' |
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33468 | 5' | -62 | NC_007605.1 | + | 30350 | 0.69 | 0.56518 |
Target: 5'- aGAGACCCGGGcuucaGGCCCuGccUCUCCUg -3' miRNA: 3'- gCUCUGGGCUCa----CCGGGcCu-AGGGGG- -5' |
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33468 | 5' | -62 | NC_007605.1 | + | 30377 | 0.72 | 0.381943 |
Target: 5'- -cGGACCCG-GUGGgccaCCCGGccgCCCCCc -3' miRNA: 3'- gcUCUGGGCuCACC----GGGCCua-GGGGG- -5' |
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33468 | 5' | -62 | NC_007605.1 | + | 30426 | 0.66 | 0.727043 |
Target: 5'- --uGGCCUcuaaGGCCCucGGGUCCCCCu -3' miRNA: 3'- gcuCUGGGcucaCCGGG--CCUAGGGGG- -5' |
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33468 | 5' | -62 | NC_007605.1 | + | 30479 | 0.72 | 0.381943 |
Target: 5'- -cGGACCCG-GUGGgccaCCCGGccgCCCCCc -3' miRNA: 3'- gcUCUGGGCuCACC----GGGCCua-GGGGG- -5' |
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33468 | 5' | -62 | NC_007605.1 | + | 30581 | 0.72 | 0.381943 |
Target: 5'- -cGGACCCG-GUGGgccaCCCGGccgCCCCCc -3' miRNA: 3'- gcUCUGGGCuCACC----GGGCCua-GGGGG- -5' |
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33468 | 5' | -62 | NC_007605.1 | + | 30683 | 0.72 | 0.381943 |
Target: 5'- -cGGACCCG-GUGGgccaCCCGGccgCCCCCc -3' miRNA: 3'- gcUCUGGGCuCACC----GGGCCua-GGGGG- -5' |
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33468 | 5' | -62 | NC_007605.1 | + | 30728 | 0.68 | 0.584176 |
Target: 5'- aGGGGCCCGAGguUGGagccagcgggcaCCCGaGGUCCCa- -3' miRNA: 3'- gCUCUGGGCUC--ACC------------GGGC-CUAGGGgg -5' |
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33468 | 5' | -62 | NC_007605.1 | + | 30785 | 0.72 | 0.381943 |
Target: 5'- -cGGACCCG-GUGGgccaCCCGGccgCCCCCc -3' miRNA: 3'- gcUCUGGGCuCACC----GGGCCua-GGGGG- -5' |
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33468 | 5' | -62 | NC_007605.1 | + | 30887 | 0.72 | 0.381943 |
Target: 5'- -cGGACCCG-GUGGgccaCCCGGccgCCCCCc -3' miRNA: 3'- gcUCUGGGCuCACC----GGGCCua-GGGGG- -5' |
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33468 | 5' | -62 | NC_007605.1 | + | 30965 | 0.66 | 0.727043 |
Target: 5'- -uAGGCCCGgggaAGUGgagggggaucGCCCGGGUCUCUg -3' miRNA: 3'- gcUCUGGGC----UCAC----------CGGGCCUAGGGGg -5' |
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33468 | 5' | -62 | NC_007605.1 | + | 30988 | 0.73 | 0.316386 |
Target: 5'- -cGGACCCG-GUGGgccaCCCGGccgCCCCCg -3' miRNA: 3'- gcUCUGGGCuCACC----GGGCCua-GGGGG- -5' |
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33468 | 5' | -62 | NC_007605.1 | + | 31027 | 0.74 | 0.290094 |
Target: 5'- uGAGACCCuccgGGCCCGGAcggucgCCCUCa -3' miRNA: 3'- gCUCUGGGcucaCCGGGCCUa-----GGGGG- -5' |
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33468 | 5' | -62 | NC_007605.1 | + | 31426 | 0.69 | 0.56518 |
Target: 5'- aGGGACCCcGGcaGCCCGGGcggCCCCa -3' miRNA: 3'- gCUCUGGGcUCacCGGGCCUa--GGGGg -5' |
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33468 | 5' | -62 | NC_007605.1 | + | 31598 | 1.1 | 0.001011 |
Target: 5'- cCGAGACCCGAGUGGCCCGGAUCCCCCc -3' miRNA: 3'- -GCUCUGGGCUCACCGGGCCUAGGGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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