Results 81 - 100 of 269 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33468 | 5' | -62 | NC_007605.1 | + | 139791 | 0.68 | 0.603293 |
Target: 5'- gGGGACugacaCCGGGccGCCgGGGUCCCuCCg -3' miRNA: 3'- gCUCUG-----GGCUCacCGGgCCUAGGG-GG- -5' |
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33468 | 5' | -62 | NC_007605.1 | + | 138651 | 0.7 | 0.506605 |
Target: 5'- gGGGGCCCGGGccggguUGGUCCaGGGccuucacuucggucUCCCCUa -3' miRNA: 3'- gCUCUGGGCUC------ACCGGG-CCU--------------AGGGGG- -5' |
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33468 | 5' | -62 | NC_007605.1 | + | 137432 | 0.73 | 0.32949 |
Target: 5'- cCGAGACCCGGGUcuggggGGCCUGuGGUggugagccugcugCCCCUg -3' miRNA: 3'- -GCUCUGGGCUCA------CCGGGC-CUA-------------GGGGG- -5' |
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33468 | 5' | -62 | NC_007605.1 | + | 137306 | 0.7 | 0.50934 |
Target: 5'- -cGGGCCCGAGgggcucugggGuGCCCGaGGUCCCUg -3' miRNA: 3'- gcUCUGGGCUCa---------C-CGGGC-CUAGGGGg -5' |
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33468 | 5' | -62 | NC_007605.1 | + | 137169 | 0.68 | 0.57466 |
Target: 5'- uGGGACCCGGGgaGGCaCCcugaGGUgCCCCu -3' miRNA: 3'- gCUCUGGGCUCa-CCG-GGc---CUAgGGGG- -5' |
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33468 | 5' | -62 | NC_007605.1 | + | 137132 | 0.7 | 0.482287 |
Target: 5'- gGGGccGCCCGGGcuGCCgGGGUCCCuCCg -3' miRNA: 3'- gCUC--UGGGCUCacCGGgCCUAGGG-GG- -5' |
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33468 | 5' | -62 | NC_007605.1 | + | 136828 | 0.68 | 0.593722 |
Target: 5'- aGAGggaaggcgacucGCCCGGGcuGCCgGGGUCCCuCCg -3' miRNA: 3'- gCUC------------UGGGCUCacCGGgCCUAGGG-GG- -5' |
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33468 | 5' | -62 | NC_007605.1 | + | 136722 | 0.67 | 0.660896 |
Target: 5'- gGGGGCugacaCCGGGccGCCgGGGUCCCuCCg -3' miRNA: 3'- gCUCUG-----GGCUCacCGGgCCUAGGG-GG- -5' |
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33468 | 5' | -62 | NC_007605.1 | + | 134021 | 0.72 | 0.39769 |
Target: 5'- cCGGGACCUG-GUGuaCCGGAUCgCCa -3' miRNA: 3'- -GCUCUGGGCuCACcgGGCCUAGgGGg -5' |
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33468 | 5' | -62 | NC_007605.1 | + | 132085 | 0.72 | 0.374228 |
Target: 5'- gCGGGugCUG-GUGGCUgGGcUCCCCUg -3' miRNA: 3'- -GCUCugGGCuCACCGGgCCuAGGGGG- -5' |
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33468 | 5' | -62 | NC_007605.1 | + | 131375 | 0.67 | 0.641704 |
Target: 5'- aCGGGGCgCGcugGGCCgCGGcugCCCCCu -3' miRNA: 3'- -GCUCUGgGCucaCCGG-GCCua-GGGGG- -5' |
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33468 | 5' | -62 | NC_007605.1 | + | 131336 | 0.74 | 0.309648 |
Target: 5'- cCGGGcCCCuGGUGGCUCGGccgcgguccUCCCCCg -3' miRNA: 3'- -GCUCuGGGcUCACCGGGCCu--------AGGGGG- -5' |
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33468 | 5' | -62 | NC_007605.1 | + | 131249 | 0.66 | 0.739931 |
Target: 5'- gCGGcGGCCuccccccccaugaagCGGGUGGCgCgGGGUCCCUg -3' miRNA: 3'- -GCU-CUGG---------------GCUCACCG-GgCCUAGGGGg -5' |
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33468 | 5' | -62 | NC_007605.1 | + | 127044 | 0.68 | 0.584176 |
Target: 5'- ---aACCCGA-UGGCCCcGGUCaCCCCa -3' miRNA: 3'- gcucUGGGCUcACCGGGcCUAG-GGGG- -5' |
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33468 | 5' | -62 | NC_007605.1 | + | 126084 | 0.68 | 0.57466 |
Target: 5'- -cGGGCCCGGacccGGCCCGGAgacugguggCCCUCc -3' miRNA: 3'- gcUCUGGGCUca--CCGGGCCUa--------GGGGG- -5' |
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33468 | 5' | -62 | NC_007605.1 | + | 124438 | 0.67 | 0.660896 |
Target: 5'- -aAGAcacCCCGAGUgcgugacgccaGGCCUGGGaccUCCUCCa -3' miRNA: 3'- gcUCU---GGGCUCA-----------CCGGGCCU---AGGGGG- -5' |
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33468 | 5' | -62 | NC_007605.1 | + | 122224 | 0.8 | 0.119239 |
Target: 5'- aGAGACaCUGGGUgacGGCCCGGGUCCUCUc -3' miRNA: 3'- gCUCUG-GGCUCA---CCGGGCCUAGGGGG- -5' |
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33468 | 5' | -62 | NC_007605.1 | + | 121714 | 0.76 | 0.231914 |
Target: 5'- cCGGcGACCU-AGUGGUccccuCCGGAUCCCCCu -3' miRNA: 3'- -GCU-CUGGGcUCACCG-----GGCCUAGGGGG- -5' |
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33468 | 5' | -62 | NC_007605.1 | + | 115851 | 0.68 | 0.571812 |
Target: 5'- uCGAGGCaauguugggccuggCCGGuGUGGCCUcggccccaGGcgCCCCCa -3' miRNA: 3'- -GCUCUG--------------GGCU-CACCGGG--------CCuaGGGGG- -5' |
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33468 | 5' | -62 | NC_007605.1 | + | 115494 | 0.67 | 0.680005 |
Target: 5'- aGGGACaaG-GUGGCCuCGGcggCCUCCg -3' miRNA: 3'- gCUCUGggCuCACCGG-GCCua-GGGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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