miRNA display CGI


Results 1 - 20 of 269 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33468 5' -62 NC_007605.1 + 140840 0.74 0.283794
Target:  5'- gGGGGCggCCGGGUGGCCCaccGGGUCCgCUg -3'
miRNA:   3'- gCUCUG--GGCUCACCGGG---CCUAGGgGG- -5'
33468 5' -62 NC_007605.1 + 22626 0.8 0.116351
Target:  5'- aGGGACCCcGGcGGCCCGGugucaGUCCCCCc -3'
miRNA:   3'- gCUCUGGGcUCaCCGGGCC-----UAGGGGG- -5'
33468 5' -62 NC_007605.1 + 25695 0.8 0.116351
Target:  5'- aGGGACCCcGGcGGCCCGGugucaGUCCCCCc -3'
miRNA:   3'- gCUCUGGGcUCaCCGGGCC-----UAGGGGG- -5'
33468 5' -62 NC_007605.1 + 28764 0.8 0.116351
Target:  5'- aGGGACCCcGGcGGCCCGGugucaGUCCCCCc -3'
miRNA:   3'- gCUCUGGGcUCaCCGGGCC-----UAGGGGG- -5'
33468 5' -62 NC_007605.1 + 31833 0.8 0.116351
Target:  5'- aGGGACCCcGGcGGCCCGGugucaGUCCCCCc -3'
miRNA:   3'- gCUCUGGGcUCaCCGGGCC-----UAGGGGG- -5'
33468 5' -62 NC_007605.1 + 122224 0.8 0.119239
Target:  5'- aGAGACaCUGGGUgacGGCCCGGGUCCUCUc -3'
miRNA:   3'- gCUCUG-GGCUCA---CCGGGCCUAGGGGG- -5'
33468 5' -62 NC_007605.1 + 61308 0.75 0.264954
Target:  5'- aGAGACCUGAG-GaGUUCGGAugaaaggUCCCCCg -3'
miRNA:   3'- gCUCUGGGCUCaC-CGGGCCU-------AGGGGG- -5'
33468 5' -62 NC_007605.1 + 140637 0.74 0.283794
Target:  5'- gGGGGCggCCGGGUGGCCCaccGGGUCCgCUg -3'
miRNA:   3'- gCUCUG--GGCUCACCGGG---CCUAGGgGG- -5'
33468 5' -62 NC_007605.1 + 140738 0.74 0.283794
Target:  5'- gGGGGCggCCGGGUGGCCCaccGGGUCCgCUg -3'
miRNA:   3'- gCUCUG--GGCUCACCGGG---CCUAGGgGG- -5'
33468 5' -62 NC_007605.1 + 19557 0.8 0.116351
Target:  5'- aGGGACCCcGGcGGCCCGGugucaGUCCCCCc -3'
miRNA:   3'- gCUCUGGGcUCaCCGGGCC-----UAGGGGG- -5'
33468 5' -62 NC_007605.1 + 16488 0.8 0.116351
Target:  5'- aGGGACCCcGGcGGCCCGGugucaGUCCCCCc -3'
miRNA:   3'- gCUCUGGGcUCaCCGGGCC-----UAGGGGG- -5'
33468 5' -62 NC_007605.1 + 13419 0.8 0.116351
Target:  5'- aGGGACCCcGGcGGCCCGGugucaGUCCCCCc -3'
miRNA:   3'- gCUCUGGGcUCaCCGGGCC-----UAGGGGG- -5'
33468 5' -62 NC_007605.1 + 16253 1.1 0.001011
Target:  5'- cCGAGACCCGAGUGGCCCGGAUCCCCCc -3'
miRNA:   3'- -GCUCUGGGCUCACCGGGCCUAGGGGG- -5'
33468 5' -62 NC_007605.1 + 19322 1.1 0.001011
Target:  5'- cCGAGACCCGAGUGGCCCGGAUCCCCCc -3'
miRNA:   3'- -GCUCUGGGCUCACCGGGCCUAGGGGG- -5'
33468 5' -62 NC_007605.1 + 22391 1.1 0.001011
Target:  5'- cCGAGACCCGAGUGGCCCGGAUCCCCCc -3'
miRNA:   3'- -GCUCUGGGCUCACCGGGCCUAGGGGG- -5'
33468 5' -62 NC_007605.1 + 25460 1.1 0.001011
Target:  5'- cCGAGACCCGAGUGGCCCGGAUCCCCCc -3'
miRNA:   3'- -GCUCUGGGCUCACCGGGCCUAGGGGG- -5'
33468 5' -62 NC_007605.1 + 28529 1.1 0.001011
Target:  5'- cCGAGACCCGAGUGGCCCGGAUCCCCCc -3'
miRNA:   3'- -GCUCUGGGCUCACCGGGCCUAGGGGG- -5'
33468 5' -62 NC_007605.1 + 31598 1.1 0.001011
Target:  5'- cCGAGACCCGAGUGGCCCGGAUCCCCCc -3'
miRNA:   3'- -GCUCUGGGCUCACCGGGCCUAGGGGG- -5'
33468 5' -62 NC_007605.1 + 34667 1.1 0.001011
Target:  5'- cCGAGACCCGAGUGGCCCGGAUCCCCCc -3'
miRNA:   3'- -GCUCUGGGCUCACCGGGCCUAGGGGG- -5'
33468 5' -62 NC_007605.1 + 34902 0.81 0.105439
Target:  5'- aGGGACCCcGGcGGCCCGGugucaGUCCCCCu -3'
miRNA:   3'- gCUCUGGGcUCaCCGGGCC-----UAGGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.