miRNA display CGI


Results 101 - 120 of 269 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33468 5' -62 NC_007605.1 + 14559 0.7 0.464643
Target:  5'- -aAGGCCCuGGaccaacccGGCCCGGGcCCCCCg -3'
miRNA:   3'- gcUCUGGGcUCa-------CCGGGCCUaGGGGG- -5'
33468 5' -62 NC_007605.1 + 17628 0.7 0.464643
Target:  5'- -aAGGCCCuGGaccaacccGGCCCGGGcCCCCCg -3'
miRNA:   3'- gcUCUGGGcUCa-------CCGGGCCUaGGGGG- -5'
33468 5' -62 NC_007605.1 + 20697 0.7 0.464643
Target:  5'- -aAGGCCCuGGaccaacccGGCCCGGGcCCCCCg -3'
miRNA:   3'- gcUCUGGGcUCa-------CCGGGCCUaGGGGG- -5'
33468 5' -62 NC_007605.1 + 23766 0.7 0.464643
Target:  5'- -aAGGCCCuGGaccaacccGGCCCGGGcCCCCCg -3'
miRNA:   3'- gcUCUGGGcUCa-------CCGGGCCUaGGGGG- -5'
33468 5' -62 NC_007605.1 + 26835 0.7 0.464643
Target:  5'- -aAGGCCCuGGaccaacccGGCCCGGGcCCCCCg -3'
miRNA:   3'- gcUCUGGGcUCa-------CCGGGCCUaGGGGG- -5'
33468 5' -62 NC_007605.1 + 18752 0.74 0.290094
Target:  5'- uGAGACCCuccgGGCCCGGAcggucgCCCUCa -3'
miRNA:   3'- gCUCUGGGcucaCCGGGCCUa-----GGGGG- -5'
33468 5' -62 NC_007605.1 + 15683 0.74 0.290094
Target:  5'- uGAGACCCuccgGGCCCGGAcggucgCCCUCa -3'
miRNA:   3'- gCUCUGGGcucaCCGGGCCUa-----GGGGG- -5'
33468 5' -62 NC_007605.1 + 141961 0.74 0.283794
Target:  5'- gGGGGCggCCGGGUGGCCCaccGGGUCCgCUg -3'
miRNA:   3'- gCUCUG--GGCUCACCGGG---CCUAGGgGG- -5'
33468 5' -62 NC_007605.1 + 142063 0.74 0.283794
Target:  5'- gGGGGCggCCGGGUGGCCCaccGGGUCCgCUg -3'
miRNA:   3'- gCUCUG--GGCUCACCGGG---CCUAGGgGG- -5'
33468 5' -62 NC_007605.1 + 142165 0.74 0.283794
Target:  5'- gGGGGCggCCGGGUGGCCCaccGGGUCCgCUg -3'
miRNA:   3'- gCUCUG--GGCUCACCGGG---CCUAGGgGG- -5'
33468 5' -62 NC_007605.1 + 142267 0.74 0.283794
Target:  5'- gGGGGCggCCGGGUGGCCCaccGGGUCCgCUg -3'
miRNA:   3'- gCUCUG--GGCUCACCGGG---CCUAGGgGG- -5'
33468 5' -62 NC_007605.1 + 142369 0.74 0.283794
Target:  5'- gGGGGCggCCGGGUGGCCCaccGGGUCCgCUg -3'
miRNA:   3'- gCUCUG--GGCUCACCGGG---CCUAGGgGG- -5'
33468 5' -62 NC_007605.1 + 142471 0.74 0.283794
Target:  5'- gGGGGCggCCGGGUGGCCCaccGGGUCCgCUg -3'
miRNA:   3'- gCUCUG--GGCUCACCGGG---CCUAGGgGG- -5'
33468 5' -62 NC_007605.1 + 142573 0.74 0.283794
Target:  5'- gGGGGCggCCGGGUGGCCCaccGGGUCCgCUg -3'
miRNA:   3'- gCUCUG--GGCUCACCGGG---CCUAGGgGG- -5'
33468 5' -62 NC_007605.1 + 142675 0.74 0.283794
Target:  5'- gGGGGCggCCGGGUGGCCCaccGGGUCCgCUg -3'
miRNA:   3'- gCUCUG--GGCUCACCGGG---CCUAGGgGG- -5'
33468 5' -62 NC_007605.1 + 142776 0.74 0.283794
Target:  5'- gGGGGCggCCGGGUGGCCCaccGGGUCCgCUg -3'
miRNA:   3'- gCUCUG--GGCUCACCGGG---CCUAGGgGG- -5'
33468 5' -62 NC_007605.1 + 142878 0.74 0.283794
Target:  5'- gGGGGCggCCGGGUGGCCCaccGGGUCCgCUg -3'
miRNA:   3'- gCUCUG--GGCUCACCGGG---CCUAGGgGG- -5'
33468 5' -62 NC_007605.1 + 142980 0.74 0.283794
Target:  5'- gGGGGCggCCGGGUGGCCCaccGGGUCCgCUg -3'
miRNA:   3'- gCUCUG--GGCUCACCGGG---CCUAGGgGG- -5'
33468 5' -62 NC_007605.1 + 143082 0.74 0.283794
Target:  5'- gGGGGCggCCGGGUGGCCCaccGGGUCCgCUg -3'
miRNA:   3'- gCUCUG--GGCUCACCGGG---CCUAGGgGG- -5'
33468 5' -62 NC_007605.1 + 12614 0.74 0.290094
Target:  5'- uGAGACCCuccgGGCCCGGAcggucgCCCUCa -3'
miRNA:   3'- gCUCUGGGcucaCCGGGCCUa-----GGGGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.