miRNA display CGI


Results 41 - 60 of 269 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33468 5' -62 NC_007605.1 + 30275 0.72 0.381943
Target:  5'- -cGGACCCG-GUGGgccaCCCGGccgCCCCCc -3'
miRNA:   3'- gcUCUGGGCuCACC----GGGCCua-GGGGG- -5'
33468 5' -62 NC_007605.1 + 28645 0.72 0.381943
Target:  5'- -cGGACCCG-GUGGgccaCCCGGccgCCCCCc -3'
miRNA:   3'- gcUCUGGGCuCACC----GGGCCua-GGGGG- -5'
33468 5' -62 NC_007605.1 + 55705 0.75 0.259678
Target:  5'- -aAGugUUGAGUGGCCuCGGGaCCCCCc -3'
miRNA:   3'- gcUCugGGCUCACCGG-GCCUaGGGGG- -5'
33468 5' -62 NC_007605.1 + 30173 0.72 0.381943
Target:  5'- -cGGACCCG-GUGGgccaCCCGGccgCCCCCc -3'
miRNA:   3'- gcUCUGGGCuCACC----GGGCCua-GGGGG- -5'
33468 5' -62 NC_007605.1 + 44199 0.75 0.23726
Target:  5'- uGAGGCCCGAGgcacggaagagGGCCgGGAuggguacauuUUCCCCa -3'
miRNA:   3'- gCUCUGGGCUCa----------CCGGgCCU----------AGGGGG- -5'
33468 5' -62 NC_007605.1 + 153995 0.7 0.506605
Target:  5'- gGGGGCCCGGGccggguUGGUCCaGGGccuucacuucggucUCCCCUa -3'
miRNA:   3'- gCUCUGGGCUC------ACCGGG-CCU--------------AGGGGG- -5'
33468 5' -62 NC_007605.1 + 30988 0.73 0.316386
Target:  5'- -cGGACCCG-GUGGgccaCCCGGccgCCCCCg -3'
miRNA:   3'- gcUCUGGGCuCACC----GGGCCua-GGGGG- -5'
33468 5' -62 NC_007605.1 + 144788 0.7 0.506605
Target:  5'- gGGGGCCCGGGccggguUGGUCCaGGGccuucacuucggucUCCCCUa -3'
miRNA:   3'- gCUCUGGGCUC------ACCGGG-CCU--------------AGGGGG- -5'
33468 5' -62 NC_007605.1 + 66893 0.7 0.49123
Target:  5'- gCGAGACCCGAGgcagacaaGGCCCcgccAUCCCa- -3'
miRNA:   3'- -GCUCUGGGCUCa-------CCGGGcc--UAGGGgg -5'
33468 5' -62 NC_007605.1 + 149408 0.7 0.482287
Target:  5'- gGGGccGCCCGGGcuGCCgGGGUCCCuCCg -3'
miRNA:   3'- gCUC--UGGGCUCacCGGgCCUAGGG-GG- -5'
33468 5' -62 NC_007605.1 + 140201 0.7 0.482287
Target:  5'- gGGGccGCCCGGGcuGCCgGGGUCCCuCCg -3'
miRNA:   3'- gCUC--UGGGCUCacCGGgCCUAGGG-GG- -5'
33468 5' -62 NC_007605.1 + 30785 0.72 0.381943
Target:  5'- -cGGACCCG-GUGGgccaCCCGGccgCCCCCc -3'
miRNA:   3'- gcUCUGGGCuCACC----GGGCCua-GGGGG- -5'
33468 5' -62 NC_007605.1 + 30479 0.72 0.381943
Target:  5'- -cGGACCCG-GUGGgccaCCCGGccgCCCCCc -3'
miRNA:   3'- gcUCUGGGCuCACC----GGGCCua-GGGGG- -5'
33468 5' -62 NC_007605.1 + 29868 0.72 0.381943
Target:  5'- -cGGACCCG-GUGGgccaCCCGGccgCCCCCc -3'
miRNA:   3'- gcUCUGGGCuCACC----GGGCCua-GGGGG- -5'
33468 5' -62 NC_007605.1 + 29562 0.72 0.381943
Target:  5'- -cGGACCCG-GUGGgccaCCCGGccgCCCCCc -3'
miRNA:   3'- gcUCUGGGCuCACC----GGGCCua-GGGGG- -5'
33468 5' -62 NC_007605.1 + 29154 0.72 0.381943
Target:  5'- -cGGACCCG-GUGGgccaCCCGGccgCCCCCc -3'
miRNA:   3'- gcUCUGGGCuCACC----GGGCCua-GGGGG- -5'
33468 5' -62 NC_007605.1 + 28849 0.72 0.381943
Target:  5'- -cGGACCCG-GUGGgccaCCCGGccgCCCCCc -3'
miRNA:   3'- gcUCUGGGCuCACC----GGGCCua-GGGGG- -5'
33468 5' -62 NC_007605.1 + 2824 0.72 0.374228
Target:  5'- aGGGGCCCaccgGGCCCGcGAcggCCCCCu -3'
miRNA:   3'- gCUCUGGGcucaCCGGGC-CUa--GGGGG- -5'
33468 5' -62 NC_007605.1 + 155845 0.73 0.32949
Target:  5'- cCGAGACCCGGGUcuggggGGCCUGuGGUggugagccugcugCCCCUg -3'
miRNA:   3'- -GCUCUGGGCUCA------CCGGGC-CUA-------------GGGGG- -5'
33468 5' -62 NC_007605.1 + 143570 0.73 0.32949
Target:  5'- cCGAGACCCGGGUcuggggGGCCUGuGGUggugagccugcugCCCCUg -3'
miRNA:   3'- -GCUCUGGGCUCA------CCGGGC-CUA-------------GGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.