miRNA display CGI


Results 61 - 80 of 269 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33468 5' -62 NC_007605.1 + 30479 0.72 0.381943
Target:  5'- -cGGACCCG-GUGGgccaCCCGGccgCCCCCc -3'
miRNA:   3'- gcUCUGGGCuCACC----GGGCCua-GGGGG- -5'
33468 5' -62 NC_007605.1 + 12100 0.71 0.430403
Target:  5'- gGAGGcguCCCGGGaGaGCCCGGAggugCCCCg -3'
miRNA:   3'- gCUCU---GGGCUCaC-CGGGCCUa---GGGGg -5'
33468 5' -62 NC_007605.1 + 137432 0.73 0.32949
Target:  5'- cCGAGACCCGGGUcuggggGGCCUGuGGUggugagccugcugCCCCUg -3'
miRNA:   3'- -GCUCUGGGCUCA------CCGGGC-CUA-------------GGGGG- -5'
33468 5' -62 NC_007605.1 + 146639 0.73 0.32949
Target:  5'- cCGAGACCCGGGUcuggggGGCCUGuGGUggugagccugcugCCCCUg -3'
miRNA:   3'- -GCUCUGGGCUCA------CCGGGC-CUA-------------GGGGG- -5'
33468 5' -62 NC_007605.1 + 158914 0.73 0.32949
Target:  5'- cCGAGACCCGGGUcuggggGGCCUGuGGUggugagccugcugCCCCUg -3'
miRNA:   3'- -GCUCUGGGCUCA------CCGGGC-CUA-------------GGGGG- -5'
33468 5' -62 NC_007605.1 + 106277 0.72 0.381943
Target:  5'- uGAGAgUCGAGggagGGCCagcaGGAguucaUCCCCCu -3'
miRNA:   3'- gCUCUgGGCUCa---CCGGg---CCU-----AGGGGG- -5'
33468 5' -62 NC_007605.1 + 28950 0.72 0.381943
Target:  5'- -cGGACCCG-GUGGgccaCCCGGccgCCCCCc -3'
miRNA:   3'- gcUCUGGGCuCACC----GGGCCua-GGGGG- -5'
33468 5' -62 NC_007605.1 + 29256 0.72 0.381943
Target:  5'- -cGGACCCG-GUGGgccaCCCGGccgCCCCCc -3'
miRNA:   3'- gcUCUGGGCuCACC----GGGCCua-GGGGG- -5'
33468 5' -62 NC_007605.1 + 29664 0.72 0.381943
Target:  5'- -cGGACCCG-GUGGgccaCCCGGccgCCCCCc -3'
miRNA:   3'- gcUCUGGGCuCACC----GGGCCua-GGGGG- -5'
33468 5' -62 NC_007605.1 + 29969 0.72 0.381943
Target:  5'- -cGGACCCG-GUGGgccaCCCGGccgCCCCCc -3'
miRNA:   3'- gcUCUGGGCuCACC----GGGCCua-GGGGG- -5'
33468 5' -62 NC_007605.1 + 127044 0.68 0.584176
Target:  5'- ---aACCCGA-UGGCCCcGGUCaCCCCa -3'
miRNA:   3'- gcucUGGGCUcACCGGGcCUAG-GGGG- -5'
33468 5' -62 NC_007605.1 + 149445 0.68 0.57466
Target:  5'- uGGGACCCGGGgaGGCaCCcugaGGUgCCCCu -3'
miRNA:   3'- gCUCUGGGCUCa-CCG-GGc---CUAgGGGG- -5'
33468 5' -62 NC_007605.1 + 146339 0.7 0.482287
Target:  5'- gGGGccGCCCGGGcuGCCgGGGUCCCuCCg -3'
miRNA:   3'- gCUC--UGGGCUCacCGGgCCUAGGG-GG- -5'
33468 5' -62 NC_007605.1 + 155546 0.7 0.482287
Target:  5'- gGGGccGCCCGGGcuGCCgGGGUCCCuCCg -3'
miRNA:   3'- gCUC--UGGGCUCacCGGgCCUAGGG-GG- -5'
33468 5' -62 NC_007605.1 + 144788 0.7 0.506605
Target:  5'- gGGGGCCCGGGccggguUGGUCCaGGGccuucacuucggucUCCCCUa -3'
miRNA:   3'- gCUCUGGGCUC------ACCGGG-CCU--------------AGGGGG- -5'
33468 5' -62 NC_007605.1 + 153995 0.7 0.506605
Target:  5'- gGGGGCCCGGGccggguUGGUCCaGGGccuucacuucggucUCCCCUa -3'
miRNA:   3'- gCUCUGGGCUC------ACCGGG-CCU--------------AGGGGG- -5'
33468 5' -62 NC_007605.1 + 143444 0.7 0.50934
Target:  5'- -cGGGCCCGAGgggcucugggGuGCCCGaGGUCCCUg -3'
miRNA:   3'- gcUCUGGGCUCa---------C-CGGGC-CUAGGGGg -5'
33468 5' -62 NC_007605.1 + 152651 0.7 0.50934
Target:  5'- -cGGGCCCGAGgggcucugggGuGCCCGaGGUCCCUg -3'
miRNA:   3'- gcUCUGGGCUCa---------C-CGGGC-CUAGGGGg -5'
33468 5' -62 NC_007605.1 + 72427 0.69 0.540739
Target:  5'- uGGGGCU--GGUGGCCUGGGaggugcugaggcccgUCCCCUg -3'
miRNA:   3'- gCUCUGGgcUCACCGGGCCU---------------AGGGGG- -5'
33468 5' -62 NC_007605.1 + 137169 0.68 0.57466
Target:  5'- uGGGACCCGGGgaGGCaCCcugaGGUgCCCCu -3'
miRNA:   3'- gCUCUGGGCUCa-CCG-GGc---CUAgGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.