Results 81 - 100 of 269 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33468 | 5' | -62 | NC_007605.1 | + | 152477 | 0.7 | 0.482287 |
Target: 5'- gGGGccGCCCGGGcuGCCgGGGUCCCuCCg -3' miRNA: 3'- gCUC--UGGGCUCacCGGgCCUAGGG-GG- -5' |
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33468 | 5' | -62 | NC_007605.1 | + | 138651 | 0.7 | 0.506605 |
Target: 5'- gGGGGCCCGGGccggguUGGUCCaGGGccuucacuucggucUCCCCUa -3' miRNA: 3'- gCUCUGGGCUC------ACCGGG-CCU--------------AGGGGG- -5' |
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33468 | 5' | -62 | NC_007605.1 | + | 147857 | 0.7 | 0.506605 |
Target: 5'- gGGGGCCCGGGccggguUGGUCCaGGGccuucacuucggucUCCCCUa -3' miRNA: 3'- gCUCUGGGCUC------ACCGGG-CCU--------------AGGGGG- -5' |
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33468 | 5' | -62 | NC_007605.1 | + | 137306 | 0.7 | 0.50934 |
Target: 5'- -cGGGCCCGAGgggcucugggGuGCCCGaGGUCCCUg -3' miRNA: 3'- gcUCUGGGCUCa---------C-CGGGC-CUAGGGGg -5' |
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33468 | 5' | -62 | NC_007605.1 | + | 146513 | 0.7 | 0.50934 |
Target: 5'- -cGGGCCCGAGgggcucugggGuGCCCGaGGUCCCUg -3' miRNA: 3'- gcUCUGGGCUCa---------C-CGGGC-CUAGGGGg -5' |
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33468 | 5' | -62 | NC_007605.1 | + | 72427 | 0.69 | 0.540739 |
Target: 5'- uGGGGCU--GGUGGCCUGGGaggugcugaggcccgUCCCCUg -3' miRNA: 3'- gCUCUGGgcUCACCGGGCCU---------------AGGGGG- -5' |
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33468 | 5' | -62 | NC_007605.1 | + | 137169 | 0.68 | 0.57466 |
Target: 5'- uGGGACCCGGGgaGGCaCCcugaGGUgCCCCu -3' miRNA: 3'- gCUCUGGGCUCa-CCG-GGc---CUAgGGGG- -5' |
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33468 | 5' | -62 | NC_007605.1 | + | 29969 | 0.72 | 0.381943 |
Target: 5'- -cGGACCCG-GUGGgccaCCCGGccgCCCCCc -3' miRNA: 3'- gcUCUGGGCuCACC----GGGCCua-GGGGG- -5' |
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33468 | 5' | -62 | NC_007605.1 | + | 29664 | 0.72 | 0.381943 |
Target: 5'- -cGGACCCG-GUGGgccaCCCGGccgCCCCCc -3' miRNA: 3'- gcUCUGGGCuCACC----GGGCCua-GGGGG- -5' |
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33468 | 5' | -62 | NC_007605.1 | + | 29256 | 0.72 | 0.381943 |
Target: 5'- -cGGACCCG-GUGGgccaCCCGGccgCCCCCc -3' miRNA: 3'- gcUCUGGGCuCACC----GGGCCua-GGGGG- -5' |
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33468 | 5' | -62 | NC_007605.1 | + | 149104 | 0.68 | 0.593722 |
Target: 5'- aGAGggaaggcgacucGCCCGGGcuGCCgGGGUCCCuCCg -3' miRNA: 3'- gCUC------------UGGGCUCacCGGgCCUAGGG-GG- -5' |
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33468 | 5' | -62 | NC_007605.1 | + | 142860 | 0.68 | 0.603293 |
Target: 5'- gGGGACugacaCCGGGccGCCgGGGUCCCuCCg -3' miRNA: 3'- gCUCUG-----GGCUCacCGGgCCUAGGG-GG- -5' |
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33468 | 5' | -62 | NC_007605.1 | + | 152067 | 0.68 | 0.603293 |
Target: 5'- gGGGACugacaCCGGGccGCCgGGGUCCCuCCg -3' miRNA: 3'- gCUCUG-----GGCUCacCGGgCCUAGGG-GG- -5' |
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33468 | 5' | -62 | NC_007605.1 | + | 516 | 0.68 | 0.603293 |
Target: 5'- gGGGGCUgGGG-GGCCgCGGGggaaggccacgCCCCCu -3' miRNA: 3'- gCUCUGGgCUCaCCGG-GCCUa----------GGGGG- -5' |
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33468 | 5' | -62 | NC_007605.1 | + | 2113 | 0.68 | 0.603293 |
Target: 5'- gGGGGCUgGGG-GGCCgCGGGggaaggccacgCCCCCu -3' miRNA: 3'- gCUCUGGgCUCaCCGG-GCCUa----------GGGGG- -5' |
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33468 | 5' | -62 | NC_007605.1 | + | 137432 | 0.73 | 0.32949 |
Target: 5'- cCGAGACCCGGGUcuggggGGCCUGuGGUggugagccugcugCCCCUg -3' miRNA: 3'- -GCUCUGGGCUCA------CCGGGC-CUA-------------GGGGG- -5' |
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33468 | 5' | -62 | NC_007605.1 | + | 146639 | 0.73 | 0.32949 |
Target: 5'- cCGAGACCCGGGUcuggggGGCCUGuGGUggugagccugcugCCCCUg -3' miRNA: 3'- -GCUCUGGGCUCA------CCGGGC-CUA-------------GGGGG- -5' |
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33468 | 5' | -62 | NC_007605.1 | + | 158914 | 0.73 | 0.32949 |
Target: 5'- cCGAGACCCGGGUcuggggGGCCUGuGGUggugagccugcugCCCCUg -3' miRNA: 3'- -GCUCUGGGCUCA------CCGGGC-CUA-------------GGGGG- -5' |
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33468 | 5' | -62 | NC_007605.1 | + | 106277 | 0.72 | 0.381943 |
Target: 5'- uGAGAgUCGAGggagGGCCagcaGGAguucaUCCCCCu -3' miRNA: 3'- gCUCUgGGCUCa---CCGGg---CCU-----AGGGGG- -5' |
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33468 | 5' | -62 | NC_007605.1 | + | 28950 | 0.72 | 0.381943 |
Target: 5'- -cGGACCCG-GUGGgccaCCCGGccgCCCCCc -3' miRNA: 3'- gcUCUGGGCuCACC----GGGCCua-GGGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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