miRNA display CGI


Results 1 - 20 of 145 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33469 5' -56.8 NC_007605.1 + 150290 0.66 0.8863
Target:  5'- uUCGCUcGGCCgGCCAGaAGAGCgCAa- -3'
miRNA:   3'- cAGUGGuCCGGaCGGUU-UCUCG-GUcu -5'
33469 5' -56.8 NC_007605.1 + 72269 0.66 0.8863
Target:  5'- uGUUGCCAGGg-UGCuCAugagcGAGGGCCAGAu -3'
miRNA:   3'- -CAGUGGUCCggACG-GU-----UUCUCGGUCU- -5'
33469 5' -56.8 NC_007605.1 + 157256 0.66 0.8863
Target:  5'- -gCACCAGGCCcGCgCAAGGucucCCAGc -3'
miRNA:   3'- caGUGGUCCGGaCG-GUUUCuc--GGUCu -5'
33469 5' -56.8 NC_007605.1 + 11633 0.66 0.8863
Target:  5'- gGUC-CCGGGCCcggggcgGCC--GGAGgCAGAg -3'
miRNA:   3'- -CAGuGGUCCGGa------CGGuuUCUCgGUCU- -5'
33469 5' -56.8 NC_007605.1 + 59189 0.66 0.8863
Target:  5'- -gCACUggAGGCCUGCCA-GGAcacGCCcGAg -3'
miRNA:   3'- caGUGG--UCCGGACGGUuUCU---CGGuCU- -5'
33469 5' -56.8 NC_007605.1 + 135006 0.66 0.884219
Target:  5'- -cCACCAGGCgguuagggaggacaCUGCCAagguugAAGAG-CAGAu -3'
miRNA:   3'- caGUGGUCCG--------------GACGGU------UUCUCgGUCU- -5'
33469 5' -56.8 NC_007605.1 + 29269 0.66 0.879285
Target:  5'- -cCACCcGGCCgccccCCGAgcuccAGGGCCGGAa -3'
miRNA:   3'- caGUGGuCCGGac---GGUU-----UCUCGGUCU- -5'
33469 5' -56.8 NC_007605.1 + 29065 0.66 0.879285
Target:  5'- -cCACCcGGCCgccccCCGAgcuccAGGGCCGGAa -3'
miRNA:   3'- caGUGGuCCGGac---GGUU-----UCUCGGUCU- -5'
33469 5' -56.8 NC_007605.1 + 29473 0.66 0.879285
Target:  5'- -cCACCcGGCCgccccCCGAgcuccAGGGCCGGAa -3'
miRNA:   3'- caGUGGuCCGGac---GGUU-----UCUCGGUCU- -5'
33469 5' -56.8 NC_007605.1 + 59043 0.66 0.879285
Target:  5'- -gCACgAGGCCgUGCCuaggaugcGGAGGGCCGa- -3'
miRNA:   3'- caGUGgUCCGG-ACGG--------UUUCUCGGUcu -5'
33469 5' -56.8 NC_007605.1 + 29575 0.66 0.879285
Target:  5'- -cCACCcGGCCgccccCCGAgcuccAGGGCCGGAa -3'
miRNA:   3'- caGUGGuCCGGac---GGUU-----UCUCGGUCU- -5'
33469 5' -56.8 NC_007605.1 + 29677 0.66 0.879285
Target:  5'- -cCACCcGGCCgccccCCGAgcuccAGGGCCGGAa -3'
miRNA:   3'- caGUGGuCCGGac---GGUU-----UCUCGGUCU- -5'
33469 5' -56.8 NC_007605.1 + 28760 0.66 0.879285
Target:  5'- -cCACCcGGCCgccccCCGAgcuccAGGGCCGGAa -3'
miRNA:   3'- caGUGGuCCGGac---GGUU-----UCUCGGUCU- -5'
33469 5' -56.8 NC_007605.1 + 29371 0.66 0.879285
Target:  5'- -cCACCcGGCCgccccCCGAgcuccAGGGCCGGAa -3'
miRNA:   3'- caGUGGuCCGGac---GGUU-----UCUCGGUCU- -5'
33469 5' -56.8 NC_007605.1 + 28862 0.66 0.879285
Target:  5'- -cCACCcGGCCgccccCCGAgcuccAGGGCCGGAa -3'
miRNA:   3'- caGUGGuCCGGac---GGUU-----UCUCGGUCU- -5'
33469 5' -56.8 NC_007605.1 + 55757 0.66 0.879285
Target:  5'- -gCGCCugGGGCCgagGCCAcaccGGCCAGGc -3'
miRNA:   3'- caGUGG--UCCGGa--CGGUuuc-UCGGUCU- -5'
33469 5' -56.8 NC_007605.1 + 29779 0.66 0.879285
Target:  5'- -cCACCcGGCCgccccCCGAgcuccAGGGCCGGAa -3'
miRNA:   3'- caGUGGuCCGGac---GGUU-----UCUCGGUCU- -5'
33469 5' -56.8 NC_007605.1 + 28658 0.66 0.879285
Target:  5'- -cCACCcGGCCgccccCCGAgcuccAGGGCCGGAa -3'
miRNA:   3'- caGUGGuCCGGac---GGUU-----UCUCGGUCU- -5'
33469 5' -56.8 NC_007605.1 + 28556 0.66 0.879285
Target:  5'- -cCACCcGGCCgccccCCGAgcuccAGGGCCGGAa -3'
miRNA:   3'- caGUGGuCCGGac---GGUU-----UCUCGGUCU- -5'
33469 5' -56.8 NC_007605.1 + 28963 0.66 0.879285
Target:  5'- -cCACCcGGCCgccccCCGAgcuccAGGGCCGGAa -3'
miRNA:   3'- caGUGGuCCGGac---GGUU-----UCUCGGUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.