miRNA display CGI


Results 1 - 20 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33494 3' -52.1 NC_007605.1 + 10336 0.66 0.988188
Target:  5'- --gAACCUGcugCAGgcCCCCGGGGcuggGCu -3'
miRNA:   3'- uaaUUGGACua-GUC--GGGGCCUCaa--CG- -5'
33494 3' -52.1 NC_007605.1 + 43755 0.66 0.988188
Target:  5'- -gUGGCUUGG--GGCUCCGGAGguggggGCu -3'
miRNA:   3'- uaAUUGGACUagUCGGGGCCUCaa----CG- -5'
33494 3' -52.1 NC_007605.1 + 109094 0.66 0.98661
Target:  5'- ---cAUCUGGaggCGGCCCUGGAcgUGCu -3'
miRNA:   3'- uaauUGGACUa--GUCGGGGCCUcaACG- -5'
33494 3' -52.1 NC_007605.1 + 115458 0.66 0.98661
Target:  5'- --cGACCUGGgccgCGGCCaCCGGcauaUGCu -3'
miRNA:   3'- uaaUUGGACUa---GUCGG-GGCCuca-ACG- -5'
33494 3' -52.1 NC_007605.1 + 119735 0.66 0.98661
Target:  5'- uUUAACCUGA--AGaCCCUGGGacagguagggucGUUGCu -3'
miRNA:   3'- uAAUUGGACUagUC-GGGGCCU------------CAACG- -5'
33494 3' -52.1 NC_007605.1 + 40041 0.66 0.984875
Target:  5'- ---uGCCUGGUCcuggAGCUcauCCGGGGaUGCu -3'
miRNA:   3'- uaauUGGACUAG----UCGG---GGCCUCaACG- -5'
33494 3' -52.1 NC_007605.1 + 108694 0.66 0.984875
Target:  5'- --gGGCCgGAgggggcagCAGCCCCGcGAuucggcGUUGCa -3'
miRNA:   3'- uaaUUGGaCUa-------GUCGGGGC-CU------CAACG- -5'
33494 3' -52.1 NC_007605.1 + 136869 0.66 0.982973
Target:  5'- -cUGGCCUGGU-GGaCCCGGGGagGCc -3'
miRNA:   3'- uaAUUGGACUAgUCgGGGCCUCaaCG- -5'
33494 3' -52.1 NC_007605.1 + 139938 0.66 0.982973
Target:  5'- -cUGGCCUGGU-GGaCCCGGGGagGCc -3'
miRNA:   3'- uaAUUGGACUAgUCgGGGCCUCaaCG- -5'
33494 3' -52.1 NC_007605.1 + 143007 0.66 0.982973
Target:  5'- -cUGGCCUGGU-GGaCCCGGGGagGCc -3'
miRNA:   3'- uaAUUGGACUAgUCgGGGCCUCaaCG- -5'
33494 3' -52.1 NC_007605.1 + 113629 0.66 0.982973
Target:  5'- --cGGCCUaGGUCAcacCCCCGGGGUccccGCu -3'
miRNA:   3'- uaaUUGGA-CUAGUc--GGGGCCUCAa---CG- -5'
33494 3' -52.1 NC_007605.1 + 158352 0.66 0.982973
Target:  5'- -cUGGCCUGGU-GGaCCCGGGGagGCc -3'
miRNA:   3'- uaAUUGGACUAgUCgGGGCCUCaaCG- -5'
33494 3' -52.1 NC_007605.1 + 155283 0.66 0.982973
Target:  5'- -cUGGCCUGGU-GGaCCCGGGGagGCc -3'
miRNA:   3'- uaAUUGGACUAgUCgGGGCCUCaaCG- -5'
33494 3' -52.1 NC_007605.1 + 152214 0.66 0.982973
Target:  5'- -cUGGCCUGGU-GGaCCCGGGGagGCc -3'
miRNA:   3'- uaAUUGGACUAgUCgGGGCCUCaaCG- -5'
33494 3' -52.1 NC_007605.1 + 149145 0.66 0.982973
Target:  5'- -cUGGCCUGGU-GGaCCCGGGGagGCc -3'
miRNA:   3'- uaAUUGGACUAgUCgGGGCCUCaaCG- -5'
33494 3' -52.1 NC_007605.1 + 146076 0.66 0.982973
Target:  5'- -cUGGCCUGGU-GGaCCCGGGGagGCc -3'
miRNA:   3'- uaAUUGGACUAgUCgGGGCCUCaaCG- -5'
33494 3' -52.1 NC_007605.1 + 12781 0.66 0.981749
Target:  5'- cUUGAuCCUGcgccgggcggacgcgGUCAGCCCCGGccAGgcccUGCc -3'
miRNA:   3'- uAAUU-GGAC---------------UAGUCGGGGCC--UCa---ACG- -5'
33494 3' -52.1 NC_007605.1 + 166317 0.66 0.980896
Target:  5'- --aGGCagGAcgCAGCCCCGGAGgccacGCa -3'
miRNA:   3'- uaaUUGgaCUa-GUCGGGGCCUCaa---CG- -5'
33494 3' -52.1 NC_007605.1 + 28106 0.67 0.977188
Target:  5'- ---cGCCUGGcgccuccucggggcCAGCCgCCGGGGUUGg -3'
miRNA:   3'- uaauUGGACUa-------------GUCGG-GGCCUCAACg -5'
33494 3' -52.1 NC_007605.1 + 25037 0.67 0.977188
Target:  5'- ---cGCCUGGcgccuccucggggcCAGCCgCCGGGGUUGg -3'
miRNA:   3'- uaauUGGACUa-------------GUCGG-GGCCUCAACg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.