miRNA display CGI


Results 1 - 20 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33494 3' -52.1 NC_007605.1 + 41430 1.09 0.006609
Target:  5'- uAUUAACCUGAUCAGCCCCGGAGUUGCc -3'
miRNA:   3'- -UAAUUGGACUAGUCGGGGCCUCAACG- -5'
33494 3' -52.1 NC_007605.1 + 153120 0.75 0.663676
Target:  5'- --gGACg-GAgagggCGGCCCCGGAGUUGUu -3'
miRNA:   3'- uaaUUGgaCUa----GUCGGGGCCUCAACG- -5'
33494 3' -52.1 NC_007605.1 + 90359 0.75 0.684618
Target:  5'- uGUUGucCUUGGUUAGCCCCGGGGcaaGCa -3'
miRNA:   3'- -UAAUu-GGACUAGUCGGGGCCUCaa-CG- -5'
33494 3' -52.1 NC_007605.1 + 47661 0.74 0.71361
Target:  5'- -gUGGCCgcaggggucgagGAUCAGCCCCGGG--UGCc -3'
miRNA:   3'- uaAUUGGa-----------CUAGUCGGGGCCUcaACG- -5'
33494 3' -52.1 NC_007605.1 + 150886 0.73 0.775432
Target:  5'- --cAGCCUGGUCAGCCgCaGAGgaaGCa -3'
miRNA:   3'- uaaUUGGACUAGUCGGgGcCUCaa-CG- -5'
33494 3' -52.1 NC_007605.1 + 161274 0.73 0.783079
Target:  5'- --cGGCCUGcuugcgcagccCAGCCCCGGGGgccUGCa -3'
miRNA:   3'- uaaUUGGACua---------GUCGGGGCCUCa--ACG- -5'
33494 3' -52.1 NC_007605.1 + 122410 0.72 0.830321
Target:  5'- ----cCCUGAUCAuGCCCaCGGuGggGCg -3'
miRNA:   3'- uaauuGGACUAGU-CGGG-GCCuCaaCG- -5'
33494 3' -52.1 NC_007605.1 + 115242 0.71 0.847182
Target:  5'- ---cACCgGcgCuGCCCCGGAuGUUGCu -3'
miRNA:   3'- uaauUGGaCuaGuCGGGGCCU-CAACG- -5'
33494 3' -52.1 NC_007605.1 + 163 0.71 0.870902
Target:  5'- cGUUuGCCggGGUCAGCCCUGGGGc--- -3'
miRNA:   3'- -UAAuUGGa-CUAGUCGGGGCCUCaacg -5'
33494 3' -52.1 NC_007605.1 + 701 0.71 0.870902
Target:  5'- cGUUuGCCggGGUCAGCCCUGGGGc--- -3'
miRNA:   3'- -UAAuUGGa-CUAGUCGGGGCCUCaacg -5'
33494 3' -52.1 NC_007605.1 + 1223 0.71 0.870902
Target:  5'- cGUUuGCCggGGUCAGCCCUGGGGc--- -3'
miRNA:   3'- -UAAuUGGa-CUAGUCGGGGCCUCaacg -5'
33494 3' -52.1 NC_007605.1 + 1761 0.71 0.870902
Target:  5'- cGUUuGCCggGGUCAGCCCUGGGGc--- -3'
miRNA:   3'- -UAAuUGGa-CUAGUCGGGGCCUCaacg -5'
33494 3' -52.1 NC_007605.1 + 5720 0.7 0.89258
Target:  5'- uUUAGCCUGAUauugucccccUAGCCCCGGGcccaGCc -3'
miRNA:   3'- uAAUUGGACUA----------GUCGGGGCCUcaa-CG- -5'
33494 3' -52.1 NC_007605.1 + 72464 0.7 0.899327
Target:  5'- -cUGACCggcgcggGAgccggCGGCCUCGGAGgUGCc -3'
miRNA:   3'- uaAUUGGa------CUa----GUCGGGGCCUCaACG- -5'
33494 3' -52.1 NC_007605.1 + 108259 0.69 0.918081
Target:  5'- --gGACCaGGUCAGCCa--GGGUUGCg -3'
miRNA:   3'- uaaUUGGaCUAGUCGGggcCUCAACG- -5'
33494 3' -52.1 NC_007605.1 + 34583 0.69 0.918081
Target:  5'- --gGGCCUG-UguGCCCgGGGGUggagGCu -3'
miRNA:   3'- uaaUUGGACuAguCGGGgCCUCAa---CG- -5'
33494 3' -52.1 NC_007605.1 + 101019 0.69 0.92383
Target:  5'- ---cACgUaGGUCgcGGCCCUGGGGUUGCc -3'
miRNA:   3'- uaauUGgA-CUAG--UCGGGGCCUCAACG- -5'
33494 3' -52.1 NC_007605.1 + 51462 0.69 0.929324
Target:  5'- --aAACCgGAgaaCAGCuCCUGGAcGUUGCg -3'
miRNA:   3'- uaaUUGGaCUa--GUCG-GGGCCU-CAACG- -5'
33494 3' -52.1 NC_007605.1 + 45932 0.69 0.934565
Target:  5'- ----uCCUGAUC--UCCCGGAGUgugGCa -3'
miRNA:   3'- uaauuGGACUAGucGGGGCCUCAa--CG- -5'
33494 3' -52.1 NC_007605.1 + 2671 0.69 0.934565
Target:  5'- --aGACCgccacCGGCCCCGGAGcagaUGCc -3'
miRNA:   3'- uaaUUGGacua-GUCGGGGCCUCa---ACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.