miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33494 5' -56.4 NC_007605.1 + 123296 0.65 0.907218
Target:  5'- -uGCUGcCCCCGGGCCUcuugGAaugcagcuggggccAGGGGa- -3'
miRNA:   3'- agUGAUuGGGGCCCGGA----CU--------------UCUCCaa -5'
33494 5' -56.4 NC_007605.1 + 79537 0.65 0.907218
Target:  5'- aCACU-GCCCCGGGCCUccuacuccagccacGccggacAGAGGa- -3'
miRNA:   3'- aGUGAuUGGGGCCCGGA--------------Cu-----UCUCCaa -5'
33494 5' -56.4 NC_007605.1 + 27726 0.66 0.902858
Target:  5'- cCACgucACCCCGGGgugCUGggGuGGg- -3'
miRNA:   3'- aGUGau-UGGGGCCCg--GACuuCuCCaa -5'
33494 5' -56.4 NC_007605.1 + 130542 0.66 0.902858
Target:  5'- cCACgucACCCCGGGgugCUGggGuGGg- -3'
miRNA:   3'- aGUGau-UGGGGCCCg--GACuuCuCCaa -5'
33494 5' -56.4 NC_007605.1 + 63071 0.66 0.889772
Target:  5'- -uGCUGGCCCCGGG-----GGAGGUg -3'
miRNA:   3'- agUGAUUGGGGCCCggacuUCUCCAa -5'
33494 5' -56.4 NC_007605.1 + 679 0.66 0.875778
Target:  5'- gUCACcccggAGCCCCGGGUCacguuUGccGGGGUc -3'
miRNA:   3'- -AGUGa----UUGGGGCCCGG-----ACuuCUCCAa -5'
33494 5' -56.4 NC_007605.1 + 1739 0.66 0.875778
Target:  5'- gUCACcccggAGCCCCGGGUCacguuUGccGGGGUc -3'
miRNA:   3'- -AGUGa----UUGGGGCCCGG-----ACuuCUCCAa -5'
33494 5' -56.4 NC_007605.1 + 1201 0.66 0.875778
Target:  5'- gUCACcccggAGCCCCGGGUCacguuUGccGGGGUc -3'
miRNA:   3'- -AGUGa----UUGGGGCCCGG-----ACuuCUCCAa -5'
33494 5' -56.4 NC_007605.1 + 141 0.66 0.875778
Target:  5'- gUCACcccggAGCCCCGGGUCacguuUGccGGGGUc -3'
miRNA:   3'- -AGUGa----UUGGGGCCCGG-----ACuuCUCCAa -5'
33494 5' -56.4 NC_007605.1 + 46234 0.66 0.875778
Target:  5'- ---aUGACCCUGGGCaccGGGAGGUg -3'
miRNA:   3'- agugAUUGGGGCCCGgacUUCUCCAa -5'
33494 5' -56.4 NC_007605.1 + 124852 0.66 0.875778
Target:  5'- aUCACaAACa-CGGGCgaGGAGGGGUa -3'
miRNA:   3'- -AGUGaUUGggGCCCGgaCUUCUCCAa -5'
33494 5' -56.4 NC_007605.1 + 32882 0.67 0.871407
Target:  5'- gCACUugcauAUUCCGGGCCUcagccaucggcccggGggGAGGg- -3'
miRNA:   3'- aGUGAu----UGGGGCCCGGA---------------CuuCUCCaa -5'
33494 5' -56.4 NC_007605.1 + 9420 0.67 0.868451
Target:  5'- -gAC-AACCCCGGGCUUGGccAGAGc-- -3'
miRNA:   3'- agUGaUUGGGGCCCGGACU--UCUCcaa -5'
33494 5' -56.4 NC_007605.1 + 153889 0.67 0.868451
Target:  5'- -aGCUGGCCCuCGGGgUUGAGGGGc-- -3'
miRNA:   3'- agUGAUUGGG-GCCCgGACUUCUCcaa -5'
33494 5' -56.4 NC_007605.1 + 68206 0.67 0.86091
Target:  5'- uUCACUGGCCCUGuGGCCaaggcucagGAcguGGGGGc- -3'
miRNA:   3'- -AGUGAUUGGGGC-CCGGa--------CU---UCUCCaa -5'
33494 5' -56.4 NC_007605.1 + 108681 0.67 0.837073
Target:  5'- aUAUUuaGACgCCGGGCCgGAGGGGGc- -3'
miRNA:   3'- aGUGA--UUGgGGCCCGGaCUUCUCCaa -5'
33494 5' -56.4 NC_007605.1 + 64981 0.67 0.837073
Target:  5'- --uUUGACCCCaaggacgccgGGGaCCUGGAGAGGc- -3'
miRNA:   3'- aguGAUUGGGG----------CCC-GGACUUCUCCaa -5'
33494 5' -56.4 NC_007605.1 + 149701 0.67 0.828744
Target:  5'- -gGCUGGCcgagaCCCGGGUCUGggGGGc-- -3'
miRNA:   3'- agUGAUUG-----GGGCCCGGACuuCUCcaa -5'
33494 5' -56.4 NC_007605.1 + 155839 0.67 0.828744
Target:  5'- -gGCUGGCcgagaCCCGGGUCUGggGGGc-- -3'
miRNA:   3'- agUGAUUG-----GGGCCCGGACuuCUCcaa -5'
33494 5' -56.4 NC_007605.1 + 152770 0.67 0.828744
Target:  5'- -gGCUGGCcgagaCCCGGGUCUGggGGGc-- -3'
miRNA:   3'- agUGAUUG-----GGGCCCGGACuuCUCcaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.