miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33495 3' -56.1 NC_007605.1 + 28473 0.66 0.918826
Target:  5'- cCCUGccuGGCACcagGGuccgGCCUGGGAgCg -3'
miRNA:   3'- aGGACu--CCGUGua-CU----UGGACCCUgGa -5'
33495 3' -56.1 NC_007605.1 + 131288 0.66 0.918826
Target:  5'- cCCUGccuGGCACcagGGuccgGCCUGGGAgCg -3'
miRNA:   3'- aGGACu--CCGUGua-CU----UGGACCCUgGa -5'
33495 3' -56.1 NC_007605.1 + 130459 0.66 0.918826
Target:  5'- cUCUG-GGCuaa--GGCCUGGGACCUu -3'
miRNA:   3'- aGGACuCCGuguacUUGGACCCUGGA- -5'
33495 3' -56.1 NC_007605.1 + 165885 0.66 0.913044
Target:  5'- uUUCUGAGGaggGC-UGGGCCcGGGGCUa -3'
miRNA:   3'- -AGGACUCCg--UGuACUUGGaCCCUGGa -5'
33495 3' -56.1 NC_007605.1 + 137102 0.66 0.913044
Target:  5'- cCCUGAGGCgggaGCAgccggGAACUcuGGACCc -3'
miRNA:   3'- aGGACUCCG----UGUa----CUUGGacCCUGGa -5'
33495 3' -56.1 NC_007605.1 + 55738 0.66 0.913044
Target:  5'- ---aGAGGCGgGaGAgaugggggcGCCUGGGGCCg -3'
miRNA:   3'- aggaCUCCGUgUaCU---------UGGACCCUGGa -5'
33495 3' -56.1 NC_007605.1 + 66223 0.66 0.913044
Target:  5'- aUCCuUGAGGCugAUGccACUUGGuGGCUc -3'
miRNA:   3'- -AGG-ACUCCGugUACu-UGGACC-CUGGa -5'
33495 3' -56.1 NC_007605.1 + 60686 0.66 0.913044
Target:  5'- -gCUGGGGCGgGgGAGCUacGGGGCCg -3'
miRNA:   3'- agGACUCCGUgUaCUUGGa-CCCUGGa -5'
33495 3' -56.1 NC_007605.1 + 93141 0.66 0.894288
Target:  5'- aCCUGGGGCugGacgacaGACuCUGGGcCCUg -3'
miRNA:   3'- aGGACUCCGugUac----UUG-GACCCuGGA- -5'
33495 3' -56.1 NC_007605.1 + 83290 0.67 0.886891
Target:  5'- cUCCUGGuaucccuGGUAUG-GAGCCUGGGggGCCg -3'
miRNA:   3'- -AGGACU-------CCGUGUaCUUGGACCC--UGGa -5'
33495 3' -56.1 NC_007605.1 + 65522 0.67 0.878512
Target:  5'- gCCUcGGGGUGCA-GGGCCUGgccgaugucuuugcGGACCUg -3'
miRNA:   3'- aGGA-CUCCGUGUaCUUGGAC--------------CCUGGA- -5'
33495 3' -56.1 NC_007605.1 + 91337 0.67 0.858521
Target:  5'- -gCUGGGGCACcgGGGCUggcguuaGGGAUCc -3'
miRNA:   3'- agGACUCCGUGuaCUUGGa------CCCUGGa -5'
33495 3' -56.1 NC_007605.1 + 167849 0.67 0.858521
Target:  5'- gUCCUGAGGCAgc-GggUCaUGuGGGCCa -3'
miRNA:   3'- -AGGACUCCGUguaCuuGG-AC-CCUGGa -5'
33495 3' -56.1 NC_007605.1 + 149404 0.68 0.841938
Target:  5'- cUCUGGGGCcgcccgggcuGCcgGGgucccuccggcugGCCUGGGACCc -3'
miRNA:   3'- aGGACUCCG----------UGuaCU-------------UGGACCCUGGa -5'
33495 3' -56.1 NC_007605.1 + 45129 0.68 0.841938
Target:  5'- gUCCgUGAGGCAUucuUGuGCCUuaguccaaacaugGGGGCCa -3'
miRNA:   3'- -AGG-ACUCCGUGu--ACuUGGA-------------CCCUGGa -5'
33495 3' -56.1 NC_007605.1 + 158611 0.68 0.841938
Target:  5'- cUCUGGGGCcgcccgggcuGCcgGGgucccuccggcugGCCUGGGACCc -3'
miRNA:   3'- aGGACUCCG----------UGuaCU-------------UGGACCCUGGa -5'
33495 3' -56.1 NC_007605.1 + 155542 0.68 0.841938
Target:  5'- cUCUGGGGCcgcccgggcuGCcgGGgucccuccggcugGCCUGGGACCc -3'
miRNA:   3'- aGGACUCCG----------UGuaCU-------------UGGACCCUGGa -5'
33495 3' -56.1 NC_007605.1 + 140197 0.68 0.841938
Target:  5'- cUCUGGGGCcgcccgggcuGCcgGGgucccuccggcugGCCUGGGACCc -3'
miRNA:   3'- aGGACUCCG----------UGuaCU-------------UGGACCCUGGa -5'
33495 3' -56.1 NC_007605.1 + 137128 0.68 0.841938
Target:  5'- cUCUGGGGCcgcccgggcuGCcgGGgucccuccggcugGCCUGGGACCc -3'
miRNA:   3'- aGGACUCCG----------UGuaCU-------------UGGACCCUGGa -5'
33495 3' -56.1 NC_007605.1 + 143266 0.68 0.841938
Target:  5'- cUCUGGGGCcgcccgggcuGCcgGGgucccuccggcugGCCUGGGACCc -3'
miRNA:   3'- aGGACUCCG----------UGuaCU-------------UGGACCCUGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.