miRNA: 3'- -UCaGUGUAGGUUGAGGa---------GGGg---CAGau -5'
miRNA: 3'- -UCAGUGUA-GGuUGAGGAGGGGCAGAU- -5'
Results 1 - 2 of 2 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. |
strand
|
Start Position | R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 3350 | 5' | -54.7 | NC_001552.1 | + | 1774 | 0.66 | 0.336138 |
|
Target: 5'- aGGcCACAUCCAACUCCauugacuaagCCCagcaGUCc- -3' miRNA: 3'- -UCaGUGUAGGUUGAGGa---------GGGg---CAGau -5' |
|||||||
| 3350 | 5' | -54.7 | NC_001552.1 | + | 5829 | 0.91 | 0.004404 |
|
Target: 5'- cAGUCACAUaCC-ACUCCUCCCCGUCUAu -3' miRNA: 3'- -UCAGUGUA-GGuUGAGGAGGGGCAGAU- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home