miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33500 3' -56.2 NC_007605.1 + 21658 0.66 0.921564
Target:  5'- ----gCCCGGGUCugGGAgGuCUGGGGUGg -3'
miRNA:   3'- gaagaGGGCCCAG--CUUgC-GACCUCAU- -5'
33500 3' -56.2 NC_007605.1 + 27796 0.66 0.921564
Target:  5'- ----gCCCGGGUCugGGAgGuCUGGGGUGg -3'
miRNA:   3'- gaagaGGGCCCAG--CUUgC-GACCUCAU- -5'
33500 3' -56.2 NC_007605.1 + 24727 0.66 0.921564
Target:  5'- ----gCCCGGGUCugGGAgGuCUGGGGUGg -3'
miRNA:   3'- gaagaGGGCCCAG--CUUgC-GACCUCAU- -5'
33500 3' -56.2 NC_007605.1 + 33933 0.66 0.921564
Target:  5'- ----gCCCGGGUCugGGAgGuCUGGGGUGg -3'
miRNA:   3'- gaagaGGGCCCAG--CUUgC-GACCUCAU- -5'
33500 3' -56.2 NC_007605.1 + 18589 0.66 0.921564
Target:  5'- ----gCCCGGGUCugGGAgGuCUGGGGUGg -3'
miRNA:   3'- gaagaGGGCCCAG--CUUgC-GACCUCAU- -5'
33500 3' -56.2 NC_007605.1 + 15520 0.66 0.921564
Target:  5'- ----gCCCGGGUCugGGAgGuCUGGGGUGg -3'
miRNA:   3'- gaagaGGGCCCAG--CUUgC-GACCUCAU- -5'
33500 3' -56.2 NC_007605.1 + 12451 0.66 0.921564
Target:  5'- ----gCCCGGGUCugGGAgGuCUGGGGUGg -3'
miRNA:   3'- gaagaGGGCCCAG--CUUgC-GACCUCAU- -5'
33500 3' -56.2 NC_007605.1 + 30865 0.66 0.921564
Target:  5'- ----gCCCGGGUCugGGAgGuCUGGGGUGg -3'
miRNA:   3'- gaagaGGGCCCAG--CUUgC-GACCUCAU- -5'
33500 3' -56.2 NC_007605.1 + 77933 0.66 0.915935
Target:  5'- uUUCUCCCacaguaGGGcCGGugGCauuugggguUGGGGUAg -3'
miRNA:   3'- gAAGAGGG------CCCaGCUugCG---------ACCUCAU- -5'
33500 3' -56.2 NC_007605.1 + 80934 0.68 0.847233
Target:  5'- uUUCUCCgGGGUCGuGCGUaUGGGa-- -3'
miRNA:   3'- gAAGAGGgCCCAGCuUGCG-ACCUcau -5'
33500 3' -56.2 NC_007605.1 + 123424 0.76 0.418698
Target:  5'- -aUCUCCCGGGgaUCGAGCucGCUGGcGUGa -3'
miRNA:   3'- gaAGAGGGCCC--AGCUUG--CGACCuCAU- -5'
33500 3' -56.2 NC_007605.1 + 50596 1.07 0.004319
Target:  5'- gCUUCUCCCGGGUCGAACGCUGGAGUAg -3'
miRNA:   3'- -GAAGAGGGCCCAGCUUGCGACCUCAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.