miRNA display CGI


Results 1 - 20 of 197 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33500 5' -65.3 NC_007605.1 + 147923 0.66 0.564352
Target:  5'- --aGCGaCGGUgaugaaGGUgGCCcCGGGCGCa -3'
miRNA:   3'- cgaCGCgGCCG------CCGgUGGuGCCCGCG- -5'
33500 5' -65.3 NC_007605.1 + 141785 0.66 0.564352
Target:  5'- --aGCGaCGGUgaugaaGGUgGCCcCGGGCGCa -3'
miRNA:   3'- cgaCGCgGCCG------CCGgUGGuGCCCGCG- -5'
33500 5' -65.3 NC_007605.1 + 144854 0.66 0.564352
Target:  5'- --aGCGaCGGUgaugaaGGUgGCCcCGGGCGCa -3'
miRNA:   3'- cgaCGCgGCCG------CCGgUGGuGCCCGCG- -5'
33500 5' -65.3 NC_007605.1 + 154061 0.66 0.564352
Target:  5'- --aGCGaCGGUgaugaaGGUgGCCcCGGGCGCa -3'
miRNA:   3'- cgaCGCgGCCG------CCGgUGGuGCCCGCG- -5'
33500 5' -65.3 NC_007605.1 + 87818 0.66 0.564352
Target:  5'- cGCgggGCuccuGCCGcGgGGCCuccuGCCGCGGGgccuCGCa -3'
miRNA:   3'- -CGa--CG----CGGC-CgCCGG----UGGUGCCC----GCG- -5'
33500 5' -65.3 NC_007605.1 + 134477 0.66 0.564352
Target:  5'- gGUUGCGgggggucgcagaUgGGUGGCCACCAUGGuG-GCc -3'
miRNA:   3'- -CGACGC------------GgCCGCCGGUGGUGCC-CgCG- -5'
33500 5' -65.3 NC_007605.1 + 150992 0.66 0.564352
Target:  5'- --aGCGaCGGUgaugaaGGUgGCCcCGGGCGCa -3'
miRNA:   3'- cgaCGCgGCCG------CCGgUGGuGCCCGCG- -5'
33500 5' -65.3 NC_007605.1 + 157130 0.66 0.564352
Target:  5'- --aGCGaCGGUgaugaaGGUgGCCcCGGGCGCa -3'
miRNA:   3'- cgaCGCgGCCG------CCGgUGGuGCCCGCG- -5'
33500 5' -65.3 NC_007605.1 + 11591 0.66 0.560611
Target:  5'- gGCUGaggagaaggcgagGCCgGGCGGCC-CagaggaGGGCGCg -3'
miRNA:   3'- -CGACg------------CGG-CCGCCGGuGgug---CCCGCG- -5'
33500 5' -65.3 NC_007605.1 + 73487 0.66 0.555011
Target:  5'- uCUGgGUagaCGGUGGCCugaguCCGCaGGCGUc -3'
miRNA:   3'- cGACgCG---GCCGCCGGu----GGUGcCCGCG- -5'
33500 5' -65.3 NC_007605.1 + 137723 0.66 0.555011
Target:  5'- gGCaGCccaGCCGacCGGCC-CCAcucCGGGCGCc -3'
miRNA:   3'- -CGaCG---CGGCc-GCCGGuGGU---GCCCGCG- -5'
33500 5' -65.3 NC_007605.1 + 169438 0.66 0.555011
Target:  5'- gGCagGCGCgGaaagucgcuGCGGCUugCugGGGCa- -3'
miRNA:   3'- -CGa-CGCGgC---------CGCCGGugGugCCCGcg -5'
33500 5' -65.3 NC_007605.1 + 131512 0.66 0.555011
Target:  5'- --aGCagacCCGGCGGCUACCcccaGGGUGg -3'
miRNA:   3'- cgaCGc---GGCCGCCGGUGGug--CCCGCg -5'
33500 5' -65.3 NC_007605.1 + 39897 0.66 0.555011
Target:  5'- cGCUGCauccGCCGGUagGGUU-CgAUGGGCGUg -3'
miRNA:   3'- -CGACG----CGGCCG--CCGGuGgUGCCCGCG- -5'
33500 5' -65.3 NC_007605.1 + 96762 0.66 0.545716
Target:  5'- --aGCGCaCGGCcucaagcuuGGCCACC-UGGGCc- -3'
miRNA:   3'- cgaCGCG-GCCG---------CCGGUGGuGCCCGcg -5'
33500 5' -65.3 NC_007605.1 + 69367 0.66 0.54479
Target:  5'- -aUGgGCuucuuaaCGGCGGgCACCAUGccgguGGCGCa -3'
miRNA:   3'- cgACgCG-------GCCGCCgGUGGUGC-----CCGCG- -5'
33500 5' -65.3 NC_007605.1 + 137114 0.66 0.536472
Target:  5'- --gGCGaggaaCCGGCcucuggGGCCGCC-CGGGCuGCc -3'
miRNA:   3'- cgaCGC-----GGCCG------CCGGUGGuGCCCG-CG- -5'
33500 5' -65.3 NC_007605.1 + 163600 0.66 0.536472
Target:  5'- cGCUGagaGCaCGGUgGGCUaauguuGCCAUGGGUaGCa -3'
miRNA:   3'- -CGACg--CG-GCCG-CCGG------UGGUGCCCG-CG- -5'
33500 5' -65.3 NC_007605.1 + 155528 0.66 0.536472
Target:  5'- --gGCGaggaaCCGGCcucuggGGCCGCC-CGGGCuGCc -3'
miRNA:   3'- cgaCGC-----GGCCG------CCGGUGGuGCCCG-CG- -5'
33500 5' -65.3 NC_007605.1 + 146321 0.66 0.536472
Target:  5'- --gGCGaggaaCCGGCcucuggGGCCGCC-CGGGCuGCc -3'
miRNA:   3'- cgaCGC-----GGCCG------CCGGUGGuGCCCG-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.