miRNA display CGI


Results 1 - 20 of 141 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33503 3' -57.7 NC_007605.1 + 136145 0.66 0.847989
Target:  5'- -aGAGGAGGG---GCUGGG-GCUaaaaaugaaaaAGCa -3'
miRNA:   3'- aaCUCCUCCCguaUGACCCuCGG-----------UCG- -5'
33503 3' -57.7 NC_007605.1 + 109855 0.66 0.847989
Target:  5'- gUGcAGGAGGcg--GCgGGGAGCCGGg -3'
miRNA:   3'- aAC-UCCUCCcguaUGaCCCUCGGUCg -5'
33503 3' -57.7 NC_007605.1 + 121243 0.66 0.839925
Target:  5'- ----cGGGGGC--GCUGGcGGCCGGCg -3'
miRNA:   3'- aacucCUCCCGuaUGACCcUCGGUCG- -5'
33503 3' -57.7 NC_007605.1 + 34247 0.66 0.839925
Target:  5'- cUGGGGuggcuGGCGgGCUGGGGGaggCGGCg -3'
miRNA:   3'- aACUCCuc---CCGUaUGACCCUCg--GUCG- -5'
33503 3' -57.7 NC_007605.1 + 50380 0.66 0.839925
Target:  5'- -cGAGGAcGGGC--GCcGGccGCCAGCg -3'
miRNA:   3'- aaCUCCU-CCCGuaUGaCCcuCGGUCG- -5'
33503 3' -57.7 NC_007605.1 + 7606 0.66 0.839925
Target:  5'- -gGAGGuGGcCAcACUGGGGaCCGGCu -3'
miRNA:   3'- aaCUCCuCCcGUaUGACCCUcGGUCG- -5'
33503 3' -57.7 NC_007605.1 + 37898 0.66 0.839925
Target:  5'- -gGAGG-GGGCGcUGCUGGugugagGAGCCcccuggaguAGCa -3'
miRNA:   3'- aaCUCCuCCCGU-AUGACC------CUCGG---------UCG- -5'
33503 3' -57.7 NC_007605.1 + 76617 0.66 0.839108
Target:  5'- --aGGGAaacgaugGGGCAaACUGGGGGaaCAGCa -3'
miRNA:   3'- aacUCCU-------CCCGUaUGACCCUCg-GUCG- -5'
33503 3' -57.7 NC_007605.1 + 109506 0.66 0.831672
Target:  5'- gUGGGGgcGGGGCcgGCggGGGAGagGGUg -3'
miRNA:   3'- aACUCC--UCCCGuaUGa-CCCUCggUCG- -5'
33503 3' -57.7 NC_007605.1 + 135272 0.66 0.830837
Target:  5'- gUGGGGGGGGUggugggaGUGgUGGGGGCa--- -3'
miRNA:   3'- aACUCCUCCCG-------UAUgACCCUCGgucg -5'
33503 3' -57.7 NC_007605.1 + 41855 0.66 0.823238
Target:  5'- aUGaAGGGaGGC-UGCcGGGAGCCGGa -3'
miRNA:   3'- aAC-UCCUcCCGuAUGaCCCUCGGUCg -5'
33503 3' -57.7 NC_007605.1 + 82902 0.66 0.820674
Target:  5'- -gGGGGAaucuuguuggaaugGGGCGUA-UGGGGGCUcggGGCu -3'
miRNA:   3'- aaCUCCU--------------CCCGUAUgACCCUCGG---UCG- -5'
33503 3' -57.7 NC_007605.1 + 106444 0.66 0.81463
Target:  5'- gUUGAccacGGGGGGCuc-CaGGGAGCCuccaAGCg -3'
miRNA:   3'- -AACU----CCUCCCGuauGaCCCUCGG----UCG- -5'
33503 3' -57.7 NC_007605.1 + 50145 0.66 0.81463
Target:  5'- ---uGGcauuuuGGGCA-GCUGGGAGgCGGCg -3'
miRNA:   3'- aacuCCu-----CCCGUaUGACCCUCgGUCG- -5'
33503 3' -57.7 NC_007605.1 + 170223 0.67 0.796924
Target:  5'- aUGAGG-GGGCAgggucGCaGGGGGUguGUc -3'
miRNA:   3'- aACUCCuCCCGUa----UGaCCCUCGguCG- -5'
33503 3' -57.7 NC_007605.1 + 169685 0.67 0.796924
Target:  5'- aUGAGG-GGGCAgggucGCaGGGGGUguGUc -3'
miRNA:   3'- aACUCCuCCCGUa----UGaCCCUCGguCG- -5'
33503 3' -57.7 NC_007605.1 + 171283 0.67 0.796924
Target:  5'- aUGAGG-GGGCAgggucGCaGGGGGUguGUc -3'
miRNA:   3'- aACUCCuCCCGUa----UGaCCCUCGguCG- -5'
33503 3' -57.7 NC_007605.1 + 170745 0.67 0.796924
Target:  5'- aUGAGG-GGGCAgggucGCaGGGGGUguGUc -3'
miRNA:   3'- aACUCCuCCCGUa----UGaCCCUCGguCG- -5'
33503 3' -57.7 NC_007605.1 + 117142 0.67 0.787844
Target:  5'- -gGAGGAGGGCGaGgaGcGGAGgaAGCg -3'
miRNA:   3'- aaCUCCUCCCGUaUgaC-CCUCggUCG- -5'
33503 3' -57.7 NC_007605.1 + 104296 0.67 0.787844
Target:  5'- cUUGGGGGGuGGUGUGCcauacaaGGGAGCCuGa -3'
miRNA:   3'- -AACUCCUC-CCGUAUGa------CCCUCGGuCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.