Results 81 - 100 of 141 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
33503 | 3' | -57.7 | NC_007605.1 | + | 24700 | 0.68 | 0.690833 |
Target: 5'- gUGGGGccGGUcgGCUGGGcuGGCCgAGCc -3' miRNA: 3'- aACUCCucCCGuaUGACCC--UCGG-UCG- -5' |
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33503 | 3' | -57.7 | NC_007605.1 | + | 27769 | 0.68 | 0.690833 |
Target: 5'- gUGGGGccGGUcgGCUGGGcuGGCCgAGCc -3' miRNA: 3'- aACUCCucCCGuaUGACCC--UCGG-UCG- -5' |
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33503 | 3' | -57.7 | NC_007605.1 | + | 153903 | 0.68 | 0.690833 |
Target: 5'- gUUGAGGGGcgcccaGGCGUccggGgaGGGGGCCAGg -3' miRNA: 3'- -AACUCCUC------CCGUA----UgaCCCUCGGUCg -5' |
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33503 | 3' | -57.7 | NC_007605.1 | + | 148491 | 0.68 | 0.700905 |
Target: 5'- aUGGGGGGugugguauGGCAcagGCUGGGGGUgAGUc -3' miRNA: 3'- aACUCCUC--------CCGUa--UGACCCUCGgUCG- -5' |
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33503 | 3' | -57.7 | NC_007605.1 | + | 107444 | 0.69 | 0.670552 |
Target: 5'- aUGGuGGGGGacaugGUGCUGGGAGCCGu- -3' miRNA: 3'- aACUcCUCCCg----UAUGACCCUCGGUcg -5' |
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33503 | 3' | -57.7 | NC_007605.1 | + | 58040 | 0.69 | 0.670552 |
Target: 5'- -aGGGGAGGGCuggagGCcGGG-GCC-GCg -3' miRNA: 3'- aaCUCCUCCCGua---UGaCCCuCGGuCG- -5' |
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33503 | 3' | -57.7 | NC_007605.1 | + | 60840 | 0.69 | 0.660361 |
Target: 5'- gUUGAGGGGGcGCAguccgaccgcCUGGGGGgacuccCCGGCa -3' miRNA: 3'- -AACUCCUCC-CGUau--------GACCCUC------GGUCG- -5' |
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33503 | 3' | -57.7 | NC_007605.1 | + | 15712 | 0.69 | 0.639918 |
Target: 5'- -cGAGGAuggaaaGGGCAUG-UGGuGGcGCCAGCg -3' miRNA: 3'- aaCUCCU------CCCGUAUgACC-CU-CGGUCG- -5' |
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33503 | 3' | -57.7 | NC_007605.1 | + | 57895 | 0.69 | 0.639918 |
Target: 5'- -gGAGGuGGGCuucUugUGGGGGCUAu- -3' miRNA: 3'- aaCUCCuCCCGu--AugACCCUCGGUcg -5' |
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33503 | 3' | -57.7 | NC_007605.1 | + | 61249 | 0.69 | 0.639918 |
Target: 5'- -aGGGGAGGGCcgGagccGGGGCCGGg -3' miRNA: 3'- aaCUCCUCCCGuaUgac-CCUCGGUCg -5' |
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33503 | 3' | -57.7 | NC_007605.1 | + | 169830 | 0.69 | 0.670552 |
Target: 5'- --aAGGGGGGCg----GGGAGCgGGCa -3' miRNA: 3'- aacUCCUCCCGuaugaCCCUCGgUCG- -5' |
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33503 | 3' | -57.7 | NC_007605.1 | + | 170368 | 0.69 | 0.670552 |
Target: 5'- --aAGGGGGGCg----GGGAGCgGGCa -3' miRNA: 3'- aacUCCUCCCGuaugaCCCUCGgUCG- -5' |
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33503 | 3' | -57.7 | NC_007605.1 | + | 135171 | 0.69 | 0.650146 |
Target: 5'- cUGAGGugguGGGgGUGgUGGGGGCgGGg -3' miRNA: 3'- aACUCCu---CCCgUAUgACCCUCGgUCg -5' |
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33503 | 3' | -57.7 | NC_007605.1 | + | 116275 | 0.69 | 0.660361 |
Target: 5'- -cGAGauGGGCAaccgGCUGacgcuGGAGCCAGCg -3' miRNA: 3'- aaCUCcuCCCGUa---UGAC-----CCUCGGUCG- -5' |
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33503 | 3' | -57.7 | NC_007605.1 | + | 20984 | 0.69 | 0.680713 |
Target: 5'- -cGAGGAGGGCuggguCUGcgacguucugcuGGAGCCcgGGCc -3' miRNA: 3'- aaCUCCUCCCGuau--GAC------------CCUCGG--UCG- -5' |
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33503 | 3' | -57.7 | NC_007605.1 | + | 171428 | 0.69 | 0.670552 |
Target: 5'- --aAGGGGGGCg----GGGAGCgGGCa -3' miRNA: 3'- aacUCCUCCCGuaugaCCCUCGgUCG- -5' |
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33503 | 3' | -57.7 | NC_007605.1 | + | 170890 | 0.69 | 0.670552 |
Target: 5'- --aAGGGGGGCg----GGGAGCgGGCa -3' miRNA: 3'- aacUCCUCCCGuaugaCCCUCGgUCG- -5' |
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33503 | 3' | -57.7 | NC_007605.1 | + | 55887 | 0.69 | 0.680713 |
Target: 5'- cUGaAGGGGGGCaAUGCUGGG-GUCGu- -3' miRNA: 3'- aAC-UCCUCCCG-UAUGACCCuCGGUcg -5' |
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33503 | 3' | -57.7 | NC_007605.1 | + | 40176 | 0.7 | 0.588838 |
Target: 5'- gUGAGGgaGGGGCGUGgucCUGGGAcCCcGCg -3' miRNA: 3'- aACUCC--UCCCGUAU---GACCCUcGGuCG- -5' |
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33503 | 3' | -57.7 | NC_007605.1 | + | 51030 | 0.7 | 0.629683 |
Target: 5'- cUUGAGGGGGGCuGUugUGGu-GCUGGUu -3' miRNA: 3'- -AACUCCUCCCG-UAugACCcuCGGUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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