Results 1 - 20 of 141 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33503 | 3' | -57.7 | NC_007605.1 | + | 53349 | 1.08 | 0.00212 |
Target: 5'- cUUGAGGAGGGCAUACUGGGAGCCAGCc -3' miRNA: 3'- -AACUCCUCCCGUAUGACCCUCGGUCG- -5' |
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33503 | 3' | -57.7 | NC_007605.1 | + | 100104 | 0.84 | 0.096483 |
Target: 5'- -aGAGGGGGGCAgaauuUGCggccggGGGAGCCAGUa -3' miRNA: 3'- aaCUCCUCCCGU-----AUGa-----CCCUCGGUCG- -5' |
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33503 | 3' | -57.7 | NC_007605.1 | + | 160870 | 0.77 | 0.272015 |
Target: 5'- cUGGuGGGGGGCAU-CUGGGGGCCcuuguugguAGCu -3' miRNA: 3'- aACU-CCUCCCGUAuGACCCUCGG---------UCG- -5' |
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33503 | 3' | -57.7 | NC_007605.1 | + | 76507 | 0.77 | 0.265016 |
Target: 5'- cUGGGGAagcgaugGGGCAUACUgGGGAGaCGGCg -3' miRNA: 3'- aACUCCU-------CCCGUAUGA-CCCUCgGUCG- -5' |
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33503 | 3' | -57.7 | NC_007605.1 | + | 10817 | 0.76 | 0.291859 |
Target: 5'- -gGAGGAGGGCAggGCUccGGGGGCagacgcaAGCg -3' miRNA: 3'- aaCUCCUCCCGUa-UGA--CCCUCGg------UCG- -5' |
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33503 | 3' | -57.7 | NC_007605.1 | + | 12295 | 0.76 | 0.285121 |
Target: 5'- cUGGGGGGacguGGUcUACUGGGAGCUGGCc -3' miRNA: 3'- aACUCCUC----CCGuAUGACCCUCGGUCG- -5' |
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33503 | 3' | -57.7 | NC_007605.1 | + | 56265 | 0.76 | 0.29872 |
Target: 5'- -aGAGGuuGGGCcacGCUGGGAGuCCGGCc -3' miRNA: 3'- aaCUCCu-CCCGua-UGACCCUC-GGUCG- -5' |
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33503 | 3' | -57.7 | NC_007605.1 | + | 33907 | 0.74 | 0.390732 |
Target: 5'- gUGGGGccGGUcgGCUGGGcuGGCCGGCc -3' miRNA: 3'- aACUCCucCCGuaUGACCC--UCGGUCG- -5' |
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33503 | 3' | -57.7 | NC_007605.1 | + | 47366 | 0.74 | 0.366071 |
Target: 5'- -cGGGGAGaGCGUGCUcaaGGGGGUCAGUa -3' miRNA: 3'- aaCUCCUCcCGUAUGA---CCCUCGGUCG- -5' |
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33503 | 3' | -57.7 | NC_007605.1 | + | 147486 | 0.73 | 0.425254 |
Target: 5'- cUGAGGAGGGCAUGaagccCUGGcugaugcaacuuGAGgCAGCc -3' miRNA: 3'- aACUCCUCCCGUAU-----GACC------------CUCgGUCG- -5' |
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33503 | 3' | -57.7 | NC_007605.1 | + | 144417 | 0.73 | 0.425254 |
Target: 5'- cUGAGGAGGGCAUGaagccCUGGcugaugcaacuuGAGgCAGCc -3' miRNA: 3'- aACUCCUCCCGUAU-----GACC------------CUCgGUCG- -5' |
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33503 | 3' | -57.7 | NC_007605.1 | + | 122452 | 0.73 | 0.425254 |
Target: 5'- ---uGGAGGGUggGCuUGGGcAGCCGGCg -3' miRNA: 3'- aacuCCUCCCGuaUG-ACCC-UCGGUCG- -5' |
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33503 | 3' | -57.7 | NC_007605.1 | + | 141348 | 0.73 | 0.425254 |
Target: 5'- cUGAGGAGGGCAUGaagccCUGGcugaugcaacuuGAGgCAGCc -3' miRNA: 3'- aACUCCUCCCGUAU-----GACC------------CUCgGUCG- -5' |
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33503 | 3' | -57.7 | NC_007605.1 | + | 138279 | 0.73 | 0.425254 |
Target: 5'- cUGAGGAGGGCAUGaagccCUGGcugaugcaacuuGAGgCAGCc -3' miRNA: 3'- aACUCCUCCCGUAU-----GACC------------CUCgGUCG- -5' |
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33503 | 3' | -57.7 | NC_007605.1 | + | 153624 | 0.73 | 0.425254 |
Target: 5'- cUGAGGAGGGCAUGaagccCUGGcugaugcaacuuGAGgCAGCc -3' miRNA: 3'- aACUCCUCCCGUAU-----GACC------------CUCgGUCG- -5' |
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33503 | 3' | -57.7 | NC_007605.1 | + | 150555 | 0.73 | 0.425254 |
Target: 5'- cUGAGGAGGGCAUGaagccCUGGcugaugcaacuuGAGgCAGCc -3' miRNA: 3'- aACUCCUCCCGUAU-----GACC------------CUCgGUCG- -5' |
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33503 | 3' | -57.7 | NC_007605.1 | + | 156692 | 0.73 | 0.425254 |
Target: 5'- cUGAGGAGGGCAUGaagccCUGGcugaugcaacuuGAGgCAGCc -3' miRNA: 3'- aACUCCUCCCGUAU-----GACC------------CUCgGUCG- -5' |
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33503 | 3' | -57.7 | NC_007605.1 | + | 165888 | 0.72 | 0.48027 |
Target: 5'- cUGAGGAGGGCuggGCccGGGGCUAGg -3' miRNA: 3'- aACUCCUCCCGua-UGacCCUCGGUCg -5' |
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33503 | 3' | -57.7 | NC_007605.1 | + | 73364 | 0.71 | 0.547494 |
Target: 5'- gUG-GGGGGGUAUG-UGGGAcccucauccgcguGCCAGCg -3' miRNA: 3'- aACuCCUCCCGUAUgACCCU-------------CGGUCG- -5' |
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33503 | 3' | -57.7 | NC_007605.1 | + | 51283 | 0.71 | 0.518807 |
Target: 5'- -aGAGG-GGGCucuguggGCUGGGAggGCCAGa -3' miRNA: 3'- aaCUCCuCCCGua-----UGACCCU--CGGUCg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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