miRNA display CGI


Results 41 - 60 of 141 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33503 3' -57.7 NC_007605.1 + 62512 0.7 0.59902
Target:  5'- -cGuGGGGGGCAg--UGaGGAuGCCAGCa -3'
miRNA:   3'- aaCuCCUCCCGUaugAC-CCU-CGGUCG- -5'
33503 3' -57.7 NC_007605.1 + 40176 0.7 0.588838
Target:  5'- gUGAGGgaGGGGCGUGgucCUGGGAcCCcGCg -3'
miRNA:   3'- aACUCC--UCCCGUAU---GACCCUcGGuCG- -5'
33503 3' -57.7 NC_007605.1 + 86412 0.7 0.59902
Target:  5'- cUGAGGAGguGGCG---UGGGAGUgGGCg -3'
miRNA:   3'- aACUCCUC--CCGUaugACCCUCGgUCG- -5'
33503 3' -57.7 NC_007605.1 + 170890 0.69 0.670552
Target:  5'- --aAGGGGGGCg----GGGAGCgGGCa -3'
miRNA:   3'- aacUCCUCCCGuaugaCCCUCGgUCG- -5'
33503 3' -57.7 NC_007605.1 + 61249 0.69 0.639918
Target:  5'- -aGGGGAGGGCcgGagccGGGGCCGGg -3'
miRNA:   3'- aaCUCCUCCCGuaUgac-CCUCGGUCg -5'
33503 3' -57.7 NC_007605.1 + 57895 0.69 0.639918
Target:  5'- -gGAGGuGGGCuucUugUGGGGGCUAu- -3'
miRNA:   3'- aaCUCCuCCCGu--AugACCCUCGGUcg -5'
33503 3' -57.7 NC_007605.1 + 60840 0.69 0.660361
Target:  5'- gUUGAGGGGGcGCAguccgaccgcCUGGGGGgacuccCCGGCa -3'
miRNA:   3'- -AACUCCUCC-CGUau--------GACCCUC------GGUCG- -5'
33503 3' -57.7 NC_007605.1 + 20984 0.69 0.680713
Target:  5'- -cGAGGAGGGCuggguCUGcgacguucugcuGGAGCCcgGGCc -3'
miRNA:   3'- aaCUCCUCCCGuau--GAC------------CCUCGG--UCG- -5'
33503 3' -57.7 NC_007605.1 + 135171 0.69 0.650146
Target:  5'- cUGAGGugguGGGgGUGgUGGGGGCgGGg -3'
miRNA:   3'- aACUCCu---CCCgUAUgACCCUCGgUCg -5'
33503 3' -57.7 NC_007605.1 + 15712 0.69 0.639918
Target:  5'- -cGAGGAuggaaaGGGCAUG-UGGuGGcGCCAGCg -3'
miRNA:   3'- aaCUCCU------CCCGUAUgACC-CU-CGGUCG- -5'
33503 3' -57.7 NC_007605.1 + 55887 0.69 0.680713
Target:  5'- cUGaAGGGGGGCaAUGCUGGG-GUCGu- -3'
miRNA:   3'- aAC-UCCUCCCG-UAUGACCCuCGGUcg -5'
33503 3' -57.7 NC_007605.1 + 171428 0.69 0.670552
Target:  5'- --aAGGGGGGCg----GGGAGCgGGCa -3'
miRNA:   3'- aacUCCUCCCGuaugaCCCUCGgUCG- -5'
33503 3' -57.7 NC_007605.1 + 170368 0.69 0.670552
Target:  5'- --aAGGGGGGCg----GGGAGCgGGCa -3'
miRNA:   3'- aacUCCUCCCGuaugaCCCUCGgUCG- -5'
33503 3' -57.7 NC_007605.1 + 169830 0.69 0.670552
Target:  5'- --aAGGGGGGCg----GGGAGCgGGCa -3'
miRNA:   3'- aacUCCUCCCGuaugaCCCUCGgUCG- -5'
33503 3' -57.7 NC_007605.1 + 107444 0.69 0.670552
Target:  5'- aUGGuGGGGGacaugGUGCUGGGAGCCGu- -3'
miRNA:   3'- aACUcCUCCCg----UAUGACCCUCGGUcg -5'
33503 3' -57.7 NC_007605.1 + 58040 0.69 0.670552
Target:  5'- -aGGGGAGGGCuggagGCcGGG-GCC-GCg -3'
miRNA:   3'- aaCUCCUCCCGua---UGaCCCuCGGuCG- -5'
33503 3' -57.7 NC_007605.1 + 116275 0.69 0.660361
Target:  5'- -cGAGauGGGCAaccgGCUGacgcuGGAGCCAGCg -3'
miRNA:   3'- aaCUCcuCCCGUa---UGAC-----CCUCGGUCG- -5'
33503 3' -57.7 NC_007605.1 + 21631 0.68 0.690833
Target:  5'- gUGGGGccGGUcgGCUGGGcuGGCCgAGCc -3'
miRNA:   3'- aACUCCucCCGuaUGACCC--UCGG-UCG- -5'
33503 3' -57.7 NC_007605.1 + 24700 0.68 0.690833
Target:  5'- gUGGGGccGGUcgGCUGGGcuGGCCgAGCc -3'
miRNA:   3'- aACUCCucCCGuaUGACCC--UCGG-UCG- -5'
33503 3' -57.7 NC_007605.1 + 18562 0.68 0.690833
Target:  5'- gUGGGGccGGUcgGCUGGGcuGGCCgAGCc -3'
miRNA:   3'- aACUCCucCCGuaUGACCC--UCGG-UCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.