miRNA display CGI


Results 81 - 100 of 141 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33503 3' -57.7 NC_007605.1 + 27769 0.68 0.690833
Target:  5'- gUGGGGccGGUcgGCUGGGcuGGCCgAGCc -3'
miRNA:   3'- aACUCCucCCGuaUGACCC--UCGG-UCG- -5'
33503 3' -57.7 NC_007605.1 + 24700 0.68 0.690833
Target:  5'- gUGGGGccGGUcgGCUGGGcuGGCCgAGCc -3'
miRNA:   3'- aACUCCucCCGuaUGACCC--UCGG-UCG- -5'
33503 3' -57.7 NC_007605.1 + 21631 0.68 0.690833
Target:  5'- gUGGGGccGGUcgGCUGGGcuGGCCgAGCc -3'
miRNA:   3'- aACUCCucCCGuaUGACCC--UCGG-UCG- -5'
33503 3' -57.7 NC_007605.1 + 18562 0.68 0.690833
Target:  5'- gUGGGGccGGUcgGCUGGGcuGGCCgAGCc -3'
miRNA:   3'- aACUCCucCCGuaUGACCC--UCGG-UCG- -5'
33503 3' -57.7 NC_007605.1 + 15493 0.68 0.690833
Target:  5'- gUGGGGccGGUcgGCUGGGcuGGCCgAGCc -3'
miRNA:   3'- aACUCCucCCGuaUGACCC--UCGG-UCG- -5'
33503 3' -57.7 NC_007605.1 + 158269 0.68 0.710918
Target:  5'- cUGAGG-GGGCucgGgUGGGAGgCGGg -3'
miRNA:   3'- aACUCCuCCCGua-UgACCCUCgGUCg -5'
33503 3' -57.7 NC_007605.1 + 131800 0.68 0.730736
Target:  5'- -gGGGGAGGGaucggcgggGCUGGGGuCCAGg -3'
miRNA:   3'- aaCUCCUCCCgua------UGACCCUcGGUCg -5'
33503 3' -57.7 NC_007605.1 + 147277 0.68 0.710918
Target:  5'- -cGGGGAGGGgGggagGCUGGGGuGgCAGg -3'
miRNA:   3'- aaCUCCUCCCgUa---UGACCCU-CgGUCg -5'
33503 3' -57.7 NC_007605.1 + 71575 0.67 0.750212
Target:  5'- -cGAGGuAGGGguUaugaccacGCUGGaGGGCCGuGCa -3'
miRNA:   3'- aaCUCC-UCCCguA--------UGACC-CUCGGU-CG- -5'
33503 3' -57.7 NC_007605.1 + 40405 0.67 0.778624
Target:  5'- --aAGGAcgccGGGCcgGCUGGGAgGUguGCa -3'
miRNA:   3'- aacUCCU----CCCGuaUGACCCU-CGguCG- -5'
33503 3' -57.7 NC_007605.1 + 143220 0.67 0.778624
Target:  5'- --aAGGAcgccGGGCcgGCUGGGAgGUguGCa -3'
miRNA:   3'- aacUCCU----CCCGuaUGACCCU-CGguCG- -5'
33503 3' -57.7 NC_007605.1 + 171283 0.67 0.796924
Target:  5'- aUGAGG-GGGCAgggucGCaGGGGGUguGUc -3'
miRNA:   3'- aACUCCuCCCGUa----UGaCCCUCGguCG- -5'
33503 3' -57.7 NC_007605.1 + 170745 0.67 0.796924
Target:  5'- aUGAGG-GGGCAgggucGCaGGGGGUguGUc -3'
miRNA:   3'- aACUCCuCCCGUa----UGaCCCUCGguCG- -5'
33503 3' -57.7 NC_007605.1 + 170223 0.67 0.796924
Target:  5'- aUGAGG-GGGCAgggucGCaGGGGGUguGUc -3'
miRNA:   3'- aACUCCuCCCGUa----UGaCCCUCGguCG- -5'
33503 3' -57.7 NC_007605.1 + 169685 0.67 0.796924
Target:  5'- aUGAGG-GGGCAgggucGCaGGGGGUguGUc -3'
miRNA:   3'- aACUCCuCCCGUa----UGaCCCUCGguCG- -5'
33503 3' -57.7 NC_007605.1 + 171605 0.67 0.787844
Target:  5'- gUUGGcGGGGGCAUGg-GGGGGUCGGa -3'
miRNA:   3'- -AACUcCUCCCGUAUgaCCCUCGGUCg -5'
33503 3' -57.7 NC_007605.1 + 144208 0.67 0.787844
Target:  5'- uUUGGGGAGuGGUuUugUGuGAGCCGGa -3'
miRNA:   3'- -AACUCCUC-CCGuAugACcCUCGGUCg -5'
33503 3' -57.7 NC_007605.1 + 78190 0.67 0.787844
Target:  5'- uUUGGGGuuGGGGUAgucacUGCUGGGguggGGCUGGUg -3'
miRNA:   3'- -AACUCC--UCCCGU-----AUGACCC----UCGGUCG- -5'
33503 3' -57.7 NC_007605.1 + 78148 0.67 0.787844
Target:  5'- uUUGGGGuuGGGGUAgucacUGCUGGGguggGGCUGGUg -3'
miRNA:   3'- -AACUCC--UCCCGU-----AUGACCC----UCGGUCG- -5'
33503 3' -57.7 NC_007605.1 + 73107 0.67 0.786929
Target:  5'- cUGGGGuguaggagAGGGCccuggugagacacGUGuCUGGGAGgCGGCa -3'
miRNA:   3'- aACUCC--------UCCCG-------------UAU-GACCCUCgGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.