miRNA display CGI


Results 1 - 20 of 141 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33503 3' -57.7 NC_007605.1 + 53349 1.08 0.00212
Target:  5'- cUUGAGGAGGGCAUACUGGGAGCCAGCc -3'
miRNA:   3'- -AACUCCUCCCGUAUGACCCUCGGUCG- -5'
33503 3' -57.7 NC_007605.1 + 100104 0.84 0.096483
Target:  5'- -aGAGGGGGGCAgaauuUGCggccggGGGAGCCAGUa -3'
miRNA:   3'- aaCUCCUCCCGU-----AUGa-----CCCUCGGUCG- -5'
33503 3' -57.7 NC_007605.1 + 76507 0.77 0.265016
Target:  5'- cUGGGGAagcgaugGGGCAUACUgGGGAGaCGGCg -3'
miRNA:   3'- aACUCCU-------CCCGUAUGA-CCCUCgGUCG- -5'
33503 3' -57.7 NC_007605.1 + 160870 0.77 0.272015
Target:  5'- cUGGuGGGGGGCAU-CUGGGGGCCcuuguugguAGCu -3'
miRNA:   3'- aACU-CCUCCCGUAuGACCCUCGG---------UCG- -5'
33503 3' -57.7 NC_007605.1 + 12295 0.76 0.285121
Target:  5'- cUGGGGGGacguGGUcUACUGGGAGCUGGCc -3'
miRNA:   3'- aACUCCUC----CCGuAUGACCCUCGGUCG- -5'
33503 3' -57.7 NC_007605.1 + 10817 0.76 0.291859
Target:  5'- -gGAGGAGGGCAggGCUccGGGGGCagacgcaAGCg -3'
miRNA:   3'- aaCUCCUCCCGUa-UGA--CCCUCGg------UCG- -5'
33503 3' -57.7 NC_007605.1 + 56265 0.76 0.29872
Target:  5'- -aGAGGuuGGGCcacGCUGGGAGuCCGGCc -3'
miRNA:   3'- aaCUCCu-CCCGua-UGACCCUC-GGUCG- -5'
33503 3' -57.7 NC_007605.1 + 47366 0.74 0.366071
Target:  5'- -cGGGGAGaGCGUGCUcaaGGGGGUCAGUa -3'
miRNA:   3'- aaCUCCUCcCGUAUGA---CCCUCGGUCG- -5'
33503 3' -57.7 NC_007605.1 + 33907 0.74 0.390732
Target:  5'- gUGGGGccGGUcgGCUGGGcuGGCCGGCc -3'
miRNA:   3'- aACUCCucCCGuaUGACCC--UCGGUCG- -5'
33503 3' -57.7 NC_007605.1 + 153624 0.73 0.425254
Target:  5'- cUGAGGAGGGCAUGaagccCUGGcugaugcaacuuGAGgCAGCc -3'
miRNA:   3'- aACUCCUCCCGUAU-----GACC------------CUCgGUCG- -5'
33503 3' -57.7 NC_007605.1 + 122452 0.73 0.425254
Target:  5'- ---uGGAGGGUggGCuUGGGcAGCCGGCg -3'
miRNA:   3'- aacuCCUCCCGuaUG-ACCC-UCGGUCG- -5'
33503 3' -57.7 NC_007605.1 + 138279 0.73 0.425254
Target:  5'- cUGAGGAGGGCAUGaagccCUGGcugaugcaacuuGAGgCAGCc -3'
miRNA:   3'- aACUCCUCCCGUAU-----GACC------------CUCgGUCG- -5'
33503 3' -57.7 NC_007605.1 + 141348 0.73 0.425254
Target:  5'- cUGAGGAGGGCAUGaagccCUGGcugaugcaacuuGAGgCAGCc -3'
miRNA:   3'- aACUCCUCCCGUAU-----GACC------------CUCgGUCG- -5'
33503 3' -57.7 NC_007605.1 + 144417 0.73 0.425254
Target:  5'- cUGAGGAGGGCAUGaagccCUGGcugaugcaacuuGAGgCAGCc -3'
miRNA:   3'- aACUCCUCCCGUAU-----GACC------------CUCgGUCG- -5'
33503 3' -57.7 NC_007605.1 + 150555 0.73 0.425254
Target:  5'- cUGAGGAGGGCAUGaagccCUGGcugaugcaacuuGAGgCAGCc -3'
miRNA:   3'- aACUCCUCCCGUAU-----GACC------------CUCgGUCG- -5'
33503 3' -57.7 NC_007605.1 + 147486 0.73 0.425254
Target:  5'- cUGAGGAGGGCAUGaagccCUGGcugaugcaacuuGAGgCAGCc -3'
miRNA:   3'- aACUCCUCCCGUAU-----GACC------------CUCgGUCG- -5'
33503 3' -57.7 NC_007605.1 + 156692 0.73 0.425254
Target:  5'- cUGAGGAGGGCAUGaagccCUGGcugaugcaacuuGAGgCAGCc -3'
miRNA:   3'- aACUCCUCCCGUAU-----GACC------------CUCgGUCG- -5'
33503 3' -57.7 NC_007605.1 + 165888 0.72 0.48027
Target:  5'- cUGAGGAGGGCuggGCccGGGGCUAGg -3'
miRNA:   3'- aACUCCUCCCGua-UGacCCUCGGUCg -5'
33503 3' -57.7 NC_007605.1 + 51283 0.71 0.518807
Target:  5'- -aGAGG-GGGCucuguggGCUGGGAggGCCAGa -3'
miRNA:   3'- aaCUCCuCCCGua-----UGACCCU--CGGUCg -5'
33503 3' -57.7 NC_007605.1 + 171059 0.71 0.518807
Target:  5'- -gGGGGuGGGGCAUG--GGGGGCCGcGCa -3'
miRNA:   3'- aaCUCC-UCCCGUAUgaCCCUCGGU-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.