Results 21 - 40 of 141 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
33503 | 3' | -57.7 | NC_007605.1 | + | 169999 | 0.71 | 0.518807 |
Target: 5'- -gGGGGuGGGGCAUG--GGGGGCCGcGCa -3' miRNA: 3'- aaCUCC-UCCCGUAUgaCCCUCGGU-CG- -5' |
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33503 | 3' | -57.7 | NC_007605.1 | + | 73364 | 0.71 | 0.547494 |
Target: 5'- gUG-GGGGGGUAUG-UGGGAcccucauccgcguGCCAGCg -3' miRNA: 3'- aACuCCUCCCGUAUgACCCU-------------CGGUCG- -5' |
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33503 | 3' | -57.7 | NC_007605.1 | + | 169728 | 0.71 | 0.558509 |
Target: 5'- -aGcGGGGGGCGgcgcGGGAGCCuGCa -3' miRNA: 3'- aaCuCCUCCCGUaugaCCCUCGGuCG- -5' |
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33503 | 3' | -57.7 | NC_007605.1 | + | 170266 | 0.71 | 0.558509 |
Target: 5'- -aGcGGGGGGCGgcgcGGGAGCCuGCa -3' miRNA: 3'- aaCuCCUCCCGUaugaCCCUCGGuCG- -5' |
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33503 | 3' | -57.7 | NC_007605.1 | + | 141081 | 0.71 | 0.558509 |
Target: 5'- gUGcAGGGGGGCAggcggcccUACUGGGGaCCGGg -3' miRNA: 3'- aAC-UCCUCCCGU--------AUGACCCUcGGUCg -5' |
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33503 | 3' | -57.7 | NC_007605.1 | + | 170788 | 0.71 | 0.558509 |
Target: 5'- -aGcGGGGGGCGgcgcGGGAGCCuGCa -3' miRNA: 3'- aaCuCCUCCCGUaugaCCCUCGGuCG- -5' |
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33503 | 3' | -57.7 | NC_007605.1 | + | 171326 | 0.71 | 0.558509 |
Target: 5'- -aGcGGGGGGCGgcgcGGGAGCCuGCa -3' miRNA: 3'- aaCuCCUCCCGUaugaCCCUCGGuCG- -5' |
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33503 | 3' | -57.7 | NC_007605.1 | + | 150288 | 0.71 | 0.558509 |
Target: 5'- gUGcAGGGGGGCAggcggcccUACUGGGGaCCGGg -3' miRNA: 3'- aAC-UCCUCCCGU--------AUGACCCUcGGUCg -5' |
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33503 | 3' | -57.7 | NC_007605.1 | + | 138012 | 0.71 | 0.558509 |
Target: 5'- gUGcAGGGGGGCAggcggcccUACUGGGGaCCGGg -3' miRNA: 3'- aAC-UCCUCCCGU--------AUGACCCUcGGUCg -5' |
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33503 | 3' | -57.7 | NC_007605.1 | + | 156426 | 0.71 | 0.558509 |
Target: 5'- gUGcAGGGGGGCAggcggcccUACUGGGGaCCGGg -3' miRNA: 3'- aAC-UCCUCCCGU--------AUGACCCUcGGUCg -5' |
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33503 | 3' | -57.7 | NC_007605.1 | + | 42409 | 0.71 | 0.558509 |
Target: 5'- aUUGGGGAGGuuuUGC-GGGGGCUAGCc -3' miRNA: 3'- -AACUCCUCCcguAUGaCCCUCGGUCG- -5' |
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33503 | 3' | -57.7 | NC_007605.1 | + | 159495 | 0.71 | 0.558509 |
Target: 5'- gUGcAGGGGGGCAggcggcccUACUGGGGaCCGGg -3' miRNA: 3'- aAC-UCCUCCCGU--------AUGACCCUcGGUCg -5' |
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33503 | 3' | -57.7 | NC_007605.1 | + | 144150 | 0.71 | 0.558509 |
Target: 5'- gUGcAGGGGGGCAggcggcccUACUGGGGaCCGGg -3' miRNA: 3'- aAC-UCCUCCCGU--------AUGACCCUcGGUCg -5' |
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33503 | 3' | -57.7 | NC_007605.1 | + | 153357 | 0.71 | 0.558509 |
Target: 5'- gUGcAGGGGGGCAggcggcccUACUGGGGaCCGGg -3' miRNA: 3'- aAC-UCCUCCCGU--------AUGACCCUcGGUCg -5' |
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33503 | 3' | -57.7 | NC_007605.1 | + | 147219 | 0.71 | 0.558509 |
Target: 5'- gUGcAGGGGGGCAggcggcccUACUGGGGaCCGGg -3' miRNA: 3'- aAC-UCCUCCCGU--------AUGACCCUcGGUCg -5' |
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33503 | 3' | -57.7 | NC_007605.1 | + | 48449 | 0.71 | 0.568576 |
Target: 5'- -aGGGGAGGaGCucg-UGGGGGCCGGg -3' miRNA: 3'- aaCUCCUCC-CGuaugACCCUCGGUCg -5' |
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33503 | 3' | -57.7 | NC_007605.1 | + | 38302 | 0.7 | 0.578688 |
Target: 5'- aUGGGGAGGGCGggGCUGGc-GCagAGCg -3' miRNA: 3'- aACUCCUCCCGUa-UGACCcuCGg-UCG- -5' |
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33503 | 3' | -57.7 | NC_007605.1 | + | 40176 | 0.7 | 0.588838 |
Target: 5'- gUGAGGgaGGGGCGUGgucCUGGGAcCCcGCg -3' miRNA: 3'- aACUCC--UCCCGUAU---GACCCUcGGuCG- -5' |
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33503 | 3' | -57.7 | NC_007605.1 | + | 86352 | 0.7 | 0.59902 |
Target: 5'- cUGAGGAGguGGCG---UGGGAGUgGGCg -3' miRNA: 3'- aACUCCUC--CCGUaugACCCUCGgUCG- -5' |
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33503 | 3' | -57.7 | NC_007605.1 | + | 62512 | 0.7 | 0.59902 |
Target: 5'- -cGuGGGGGGCAg--UGaGGAuGCCAGCa -3' miRNA: 3'- aaCuCCUCCCGUaugAC-CCU-CGGUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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