Results 81 - 100 of 141 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
33503 | 3' | -57.7 | NC_007605.1 | + | 145993 | 0.68 | 0.710918 |
Target: 5'- cUGAGG-GGGCucgGgUGGGAGgCGGg -3' miRNA: 3'- aACUCCuCCCGua-UgACCCUCgGUCg -5' |
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33503 | 3' | -57.7 | NC_007605.1 | + | 142924 | 0.68 | 0.710918 |
Target: 5'- cUGAGG-GGGCucgGgUGGGAGgCGGg -3' miRNA: 3'- aACUCCuCCCGua-UgACCCUCgGUCg -5' |
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33503 | 3' | -57.7 | NC_007605.1 | + | 159553 | 0.68 | 0.710918 |
Target: 5'- -cGGGGAGGGgGggagGCUGGGGuGgCAGg -3' miRNA: 3'- aaCUCCUCCCgUa---UGACCCU-CgGUCg -5' |
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33503 | 3' | -57.7 | NC_007605.1 | + | 139855 | 0.68 | 0.710918 |
Target: 5'- cUGAGG-GGGCucgGgUGGGAGgCGGg -3' miRNA: 3'- aACUCCuCCCGua-UgACCCUCgGUCg -5' |
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33503 | 3' | -57.7 | NC_007605.1 | + | 11621 | 0.68 | 0.710918 |
Target: 5'- -aGAGGAGGGCGcggucccggGCccgGGGcGGCCGGa -3' miRNA: 3'- aaCUCCUCCCGUa--------UGa--CCC-UCGGUCg -5' |
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33503 | 3' | -57.7 | NC_007605.1 | + | 158269 | 0.68 | 0.710918 |
Target: 5'- cUGAGG-GGGCucgGgUGGGAGgCGGg -3' miRNA: 3'- aACUCCuCCCGua-UgACCCUCgGUCg -5' |
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33503 | 3' | -57.7 | NC_007605.1 | + | 110248 | 0.68 | 0.730736 |
Target: 5'- gUUGGGGuAGGGgAuuUugUGGGuggAGUCAGCg -3' miRNA: 3'- -AACUCC-UCCCgU--AugACCC---UCGGUCG- -5' |
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33503 | 3' | -57.7 | NC_007605.1 | + | 131800 | 0.68 | 0.730736 |
Target: 5'- -gGGGGAGGGaucggcgggGCUGGGGuCCAGg -3' miRNA: 3'- aaCUCCUCCCgua------UGACCCUcGGUCg -5' |
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33503 | 3' | -57.7 | NC_007605.1 | + | 71575 | 0.67 | 0.750212 |
Target: 5'- -cGAGGuAGGGguUaugaccacGCUGGaGGGCCGuGCa -3' miRNA: 3'- aaCUCC-UCCCguA--------UGACC-CUCGGU-CG- -5' |
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33503 | 3' | -57.7 | NC_007605.1 | + | 152737 | 0.67 | 0.750212 |
Target: 5'- -cGAGGAGGcGCcagGCgcgGGGccGGUCGGCu -3' miRNA: 3'- aaCUCCUCC-CGua-UGa--CCC--UCGGUCG- -5' |
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33503 | 3' | -57.7 | NC_007605.1 | + | 158875 | 0.67 | 0.750212 |
Target: 5'- -cGAGGAGGcGCcagGCgcgGGGccGGUCGGCu -3' miRNA: 3'- aaCUCCUCC-CGua-UGa--CCC--UCGGUCG- -5' |
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33503 | 3' | -57.7 | NC_007605.1 | + | 155806 | 0.67 | 0.750212 |
Target: 5'- -cGAGGAGGcGCcagGCgcgGGGccGGUCGGCu -3' miRNA: 3'- aaCUCCUCC-CGua-UGa--CCC--UCGGUCG- -5' |
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33503 | 3' | -57.7 | NC_007605.1 | + | 146600 | 0.67 | 0.750212 |
Target: 5'- -cGAGGAGGcGCcagGCgcgGGGccGGUCGGCu -3' miRNA: 3'- aaCUCCUCC-CGua-UGa--CCC--UCGGUCG- -5' |
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33503 | 3' | -57.7 | NC_007605.1 | + | 140462 | 0.67 | 0.750212 |
Target: 5'- -cGAGGAGGcGCcagGCgcgGGGccGGUCGGCu -3' miRNA: 3'- aaCUCCUCC-CGua-UGa--CCC--UCGGUCG- -5' |
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33503 | 3' | -57.7 | NC_007605.1 | + | 143531 | 0.67 | 0.750212 |
Target: 5'- -cGAGGAGGcGCcagGCgcgGGGccGGUCGGCu -3' miRNA: 3'- aaCUCCUCC-CGua-UGa--CCC--UCGGUCG- -5' |
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33503 | 3' | -57.7 | NC_007605.1 | + | 149669 | 0.67 | 0.750212 |
Target: 5'- -cGAGGAGGcGCcagGCgcgGGGccGGUCGGCu -3' miRNA: 3'- aaCUCCUCC-CGua-UGa--CCC--UCGGUCG- -5' |
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33503 | 3' | -57.7 | NC_007605.1 | + | 137393 | 0.67 | 0.750212 |
Target: 5'- -cGAGGAGGcGCcagGCgcgGGGccGGUCGGCu -3' miRNA: 3'- aaCUCCUCC-CGua-UGa--CCC--UCGGUCG- -5' |
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33503 | 3' | -57.7 | NC_007605.1 | + | 510 | 0.67 | 0.759798 |
Target: 5'- gUGcGGGGGGGCug---GGGGGCC-GCg -3' miRNA: 3'- aAC-UCCUCCCGuaugaCCCUCGGuCG- -5' |
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33503 | 3' | -57.7 | NC_007605.1 | + | 1047 | 0.67 | 0.759798 |
Target: 5'- gUGcGGGGGGGCug---GGGGGCC-GCg -3' miRNA: 3'- aAC-UCCUCCCGuaugaCCCUCGGuCG- -5' |
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33503 | 3' | -57.7 | NC_007605.1 | + | 1570 | 0.67 | 0.759798 |
Target: 5'- gUGcGGGGGGGCug---GGGGGCC-GCg -3' miRNA: 3'- aAC-UCCUCCCGuaugaCCCUCGGuCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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