miRNA display CGI


Results 21 - 40 of 141 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33503 3' -57.7 NC_007605.1 + 78148 0.67 0.787844
Target:  5'- uUUGGGGuuGGGGUAgucacUGCUGGGguggGGCUGGUg -3'
miRNA:   3'- -AACUCC--UCCCGU-----AUGACCC----UCGGUCG- -5'
33503 3' -57.7 NC_007605.1 + 104296 0.67 0.787844
Target:  5'- cUUGGGGGGuGGUGUGCcauacaaGGGAGCCuGa -3'
miRNA:   3'- -AACUCCUC-CCGUAUGa------CCCUCGGuCg -5'
33503 3' -57.7 NC_007605.1 + 144208 0.67 0.787844
Target:  5'- uUUGGGGAGuGGUuUugUGuGAGCCGGa -3'
miRNA:   3'- -AACUCCUC-CCGuAugACcCUCGGUCg -5'
33503 3' -57.7 NC_007605.1 + 39720 0.67 0.787844
Target:  5'- uUUGAGGAGGGC---CUGGccGGCCuugGGCu -3'
miRNA:   3'- -AACUCCUCCCGuauGACCc-UCGG---UCG- -5'
33503 3' -57.7 NC_007605.1 + 171605 0.67 0.787844
Target:  5'- gUUGGcGGGGGCAUGg-GGGGGUCGGa -3'
miRNA:   3'- -AACUcCUCCCGUAUgaCCCUCGGUCg -5'
33503 3' -57.7 NC_007605.1 + 72344 0.67 0.787844
Target:  5'- -gGAGGGGGGCGgcgu-GGAGCUGGg -3'
miRNA:   3'- aaCUCCUCCCGUaugacCCUCGGUCg -5'
33503 3' -57.7 NC_007605.1 + 78190 0.67 0.787844
Target:  5'- uUUGGGGuuGGGGUAgucacUGCUGGGguggGGCUGGUg -3'
miRNA:   3'- -AACUCC--UCCCGU-----AUGACCC----UCGGUCG- -5'
33503 3' -57.7 NC_007605.1 + 73107 0.67 0.786929
Target:  5'- cUGGGGuguaggagAGGGCccuggugagacacGUGuCUGGGAGgCGGCa -3'
miRNA:   3'- aACUCC--------UCCCG-------------UAU-GACCCUCgGUCG- -5'
33503 3' -57.7 NC_007605.1 + 143220 0.67 0.778624
Target:  5'- --aAGGAcgccGGGCcgGCUGGGAgGUguGCa -3'
miRNA:   3'- aacUCCU----CCCGuaUGACCCU-CGguCG- -5'
33503 3' -57.7 NC_007605.1 + 40405 0.67 0.778624
Target:  5'- --aAGGAcgccGGGCcgGCUGGGAgGUguGCa -3'
miRNA:   3'- aacUCCU----CCCGuaUGACCCU-CGguCG- -5'
33503 3' -57.7 NC_007605.1 + 45691 0.67 0.778624
Target:  5'- -gGAGGAGGGgA-ACUGGaAGCUcGCg -3'
miRNA:   3'- aaCUCCUCCCgUaUGACCcUCGGuCG- -5'
33503 3' -57.7 NC_007605.1 + 95701 0.67 0.769272
Target:  5'- -cGAGGGucauGGGCucAUGCUGuGGGG-CAGCa -3'
miRNA:   3'- aaCUCCU----CCCG--UAUGAC-CCUCgGUCG- -5'
33503 3' -57.7 NC_007605.1 + 152790 0.67 0.759798
Target:  5'- ---uGGGGGGCcuGUGgUGGuGAGCCuGCu -3'
miRNA:   3'- aacuCCUCCCG--UAUgACC-CUCGGuCG- -5'
33503 3' -57.7 NC_007605.1 + 140515 0.67 0.759798
Target:  5'- ---uGGGGGGCcuGUGgUGGuGAGCCuGCu -3'
miRNA:   3'- aacuCCUCCCG--UAUgACC-CUCGGuCG- -5'
33503 3' -57.7 NC_007605.1 + 146653 0.67 0.759798
Target:  5'- ---uGGGGGGCcuGUGgUGGuGAGCCuGCu -3'
miRNA:   3'- aacuCCUCCCG--UAUgACC-CUCGGuCG- -5'
33503 3' -57.7 NC_007605.1 + 149721 0.67 0.759798
Target:  5'- ---uGGGGGGCcuGUGgUGGuGAGCCuGCu -3'
miRNA:   3'- aacuCCUCCCG--UAUgACC-CUCGGuCG- -5'
33503 3' -57.7 NC_007605.1 + 1570 0.67 0.759798
Target:  5'- gUGcGGGGGGGCug---GGGGGCC-GCg -3'
miRNA:   3'- aAC-UCCUCCCGuaugaCCCUCGGuCG- -5'
33503 3' -57.7 NC_007605.1 + 137446 0.67 0.759798
Target:  5'- ---uGGGGGGCcuGUGgUGGuGAGCCuGCu -3'
miRNA:   3'- aacuCCUCCCG--UAUgACC-CUCGGuCG- -5'
33503 3' -57.7 NC_007605.1 + 155859 0.67 0.759798
Target:  5'- ---uGGGGGGCcuGUGgUGGuGAGCCuGCu -3'
miRNA:   3'- aacuCCUCCCG--UAUgACC-CUCGGuCG- -5'
33503 3' -57.7 NC_007605.1 + 2107 0.67 0.759798
Target:  5'- gUGcGGGGGGGCug---GGGGGCC-GCg -3'
miRNA:   3'- aAC-UCCUCCCGuaugaCCCUCGGuCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.