miRNA display CGI


Results 61 - 80 of 141 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33503 3' -57.7 NC_007605.1 + 150346 0.68 0.710918
Target:  5'- -cGGGGAGGGgGggagGCUGGGGuGgCAGg -3'
miRNA:   3'- aaCUCCUCCCgUa---UGACCCU-CgGUCg -5'
33503 3' -57.7 NC_007605.1 + 153415 0.68 0.710918
Target:  5'- -cGGGGAGGGgGggagGCUGGGGuGgCAGg -3'
miRNA:   3'- aaCUCCUCCCgUa---UGACCCU-CgGUCg -5'
33503 3' -57.7 NC_007605.1 + 145993 0.68 0.710918
Target:  5'- cUGAGG-GGGCucgGgUGGGAGgCGGg -3'
miRNA:   3'- aACUCCuCCCGua-UgACCCUCgGUCg -5'
33503 3' -57.7 NC_007605.1 + 142924 0.68 0.710918
Target:  5'- cUGAGG-GGGCucgGgUGGGAGgCGGg -3'
miRNA:   3'- aACUCCuCCCGua-UgACCCUCgGUCg -5'
33503 3' -57.7 NC_007605.1 + 155200 0.68 0.710918
Target:  5'- cUGAGG-GGGCucgGgUGGGAGgCGGg -3'
miRNA:   3'- aACUCCuCCCGua-UgACCCUCgGUCg -5'
33503 3' -57.7 NC_007605.1 + 141139 0.68 0.710918
Target:  5'- -cGGGGAGGGgGggagGCUGGGGuGgCAGg -3'
miRNA:   3'- aaCUCCUCCCgUa---UGACCCU-CgGUCg -5'
33503 3' -57.7 NC_007605.1 + 144208 0.68 0.710918
Target:  5'- -cGGGGAGGGgGggagGCUGGGGuGgCAGg -3'
miRNA:   3'- aaCUCCUCCCgUa---UGACCCU-CgGUCg -5'
33503 3' -57.7 NC_007605.1 + 147277 0.68 0.710918
Target:  5'- -cGGGGAGGGgGggagGCUGGGGuGgCAGg -3'
miRNA:   3'- aaCUCCUCCCgUa---UGACCCU-CgGUCg -5'
33503 3' -57.7 NC_007605.1 + 159553 0.68 0.710918
Target:  5'- -cGGGGAGGGgGggagGCUGGGGuGgCAGg -3'
miRNA:   3'- aaCUCCUCCCgUa---UGACCCU-CgGUCg -5'
33503 3' -57.7 NC_007605.1 + 131653 0.68 0.710918
Target:  5'- -gGAGG-GGGCGUcCcGGGAccccagcccccaGCCGGCa -3'
miRNA:   3'- aaCUCCuCCCGUAuGaCCCU------------CGGUCG- -5'
33503 3' -57.7 NC_007605.1 + 136786 0.68 0.710918
Target:  5'- cUGAGG-GGGCucgGgUGGGAGgCGGg -3'
miRNA:   3'- aACUCCuCCCGua-UgACCCUCgGUCg -5'
33503 3' -57.7 NC_007605.1 + 152131 0.68 0.710918
Target:  5'- cUGAGG-GGGCucgGgUGGGAGgCGGg -3'
miRNA:   3'- aACUCCuCCCGua-UgACCCUCgGUCg -5'
33503 3' -57.7 NC_007605.1 + 11621 0.68 0.710918
Target:  5'- -aGAGGAGGGCGcggucccggGCccgGGGcGGCCGGa -3'
miRNA:   3'- aaCUCCUCCCGUa--------UGa--CCC-UCGGUCg -5'
33503 3' -57.7 NC_007605.1 + 46036 0.68 0.704917
Target:  5'- --cAGGGGGGgAUcCUGGuaaccugauucagauGAGCCAGCa -3'
miRNA:   3'- aacUCCUCCCgUAuGACC---------------CUCGGUCG- -5'
33503 3' -57.7 NC_007605.1 + 148491 0.68 0.700905
Target:  5'- aUGGGGGGugugguauGGCAcagGCUGGGGGUgAGUc -3'
miRNA:   3'- aACUCCUC--------CCGUa--UGACCCUCGgUCG- -5'
33503 3' -57.7 NC_007605.1 + 21631 0.68 0.690833
Target:  5'- gUGGGGccGGUcgGCUGGGcuGGCCgAGCc -3'
miRNA:   3'- aACUCCucCCGuaUGACCC--UCGG-UCG- -5'
33503 3' -57.7 NC_007605.1 + 18562 0.68 0.690833
Target:  5'- gUGGGGccGGUcgGCUGGGcuGGCCgAGCc -3'
miRNA:   3'- aACUCCucCCGuaUGACCC--UCGG-UCG- -5'
33503 3' -57.7 NC_007605.1 + 15493 0.68 0.690833
Target:  5'- gUGGGGccGGUcgGCUGGGcuGGCCgAGCc -3'
miRNA:   3'- aACUCCucCCGuaUGACCC--UCGG-UCG- -5'
33503 3' -57.7 NC_007605.1 + 12424 0.68 0.690833
Target:  5'- gUGGGGccGGUcgGCUGGGcuGGCCgAGCc -3'
miRNA:   3'- aACUCCucCCGuaUGACCC--UCGG-UCG- -5'
33503 3' -57.7 NC_007605.1 + 82010 0.68 0.690833
Target:  5'- -gGAGGAGGGCGgg-UGGcAGCC-GCg -3'
miRNA:   3'- aaCUCCUCCCGUaugACCcUCGGuCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.