miRNA display CGI


Results 21 - 40 of 141 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33503 3' -57.7 NC_007605.1 + 38302 0.7 0.578688
Target:  5'- aUGGGGAGGGCGggGCUGGc-GCagAGCg -3'
miRNA:   3'- aACUCCUCCCGUa-UGACCcuCGg-UCG- -5'
33503 3' -57.7 NC_007605.1 + 39720 0.67 0.787844
Target:  5'- uUUGAGGAGGGC---CUGGccGGCCuugGGCu -3'
miRNA:   3'- -AACUCCUCCCGuauGACCc-UCGG---UCG- -5'
33503 3' -57.7 NC_007605.1 + 40176 0.7 0.588838
Target:  5'- gUGAGGgaGGGGCGUGgucCUGGGAcCCcGCg -3'
miRNA:   3'- aACUCC--UCCCGUAU---GACCCUcGGuCG- -5'
33503 3' -57.7 NC_007605.1 + 40405 0.67 0.778624
Target:  5'- --aAGGAcgccGGGCcgGCUGGGAgGUguGCa -3'
miRNA:   3'- aacUCCU----CCCGuaUGACCCU-CGguCG- -5'
33503 3' -57.7 NC_007605.1 + 41855 0.66 0.823238
Target:  5'- aUGaAGGGaGGC-UGCcGGGAGCCGGa -3'
miRNA:   3'- aAC-UCCUcCCGuAUGaCCCUCGGUCg -5'
33503 3' -57.7 NC_007605.1 + 42409 0.71 0.558509
Target:  5'- aUUGGGGAGGuuuUGC-GGGGGCUAGCc -3'
miRNA:   3'- -AACUCCUCCcguAUGaCCCUCGGUCG- -5'
33503 3' -57.7 NC_007605.1 + 45691 0.67 0.778624
Target:  5'- -gGAGGAGGGgA-ACUGGaAGCUcGCg -3'
miRNA:   3'- aaCUCCUCCCgUaUGACCcUCGGuCG- -5'
33503 3' -57.7 NC_007605.1 + 46036 0.68 0.704917
Target:  5'- --cAGGGGGGgAUcCUGGuaaccugauucagauGAGCCAGCa -3'
miRNA:   3'- aacUCCUCCCgUAuGACC---------------CUCGGUCG- -5'
33503 3' -57.7 NC_007605.1 + 47366 0.74 0.366071
Target:  5'- -cGGGGAGaGCGUGCUcaaGGGGGUCAGUa -3'
miRNA:   3'- aaCUCCUCcCGUAUGA---CCCUCGGUCG- -5'
33503 3' -57.7 NC_007605.1 + 48449 0.71 0.568576
Target:  5'- -aGGGGAGGaGCucg-UGGGGGCCGGg -3'
miRNA:   3'- aaCUCCUCC-CGuaugACCCUCGGUCg -5'
33503 3' -57.7 NC_007605.1 + 50145 0.66 0.81463
Target:  5'- ---uGGcauuuuGGGCA-GCUGGGAGgCGGCg -3'
miRNA:   3'- aacuCCu-----CCCGUaUGACCCUCgGUCG- -5'
33503 3' -57.7 NC_007605.1 + 50380 0.66 0.839925
Target:  5'- -cGAGGAcGGGC--GCcGGccGCCAGCg -3'
miRNA:   3'- aaCUCCU-CCCGuaUGaCCcuCGGUCG- -5'
33503 3' -57.7 NC_007605.1 + 51030 0.7 0.629683
Target:  5'- cUUGAGGGGGGCuGUugUGGu-GCUGGUu -3'
miRNA:   3'- -AACUCCUCCCG-UAugACCcuCGGUCG- -5'
33503 3' -57.7 NC_007605.1 + 51283 0.71 0.518807
Target:  5'- -aGAGG-GGGCucuguggGCUGGGAggGCCAGa -3'
miRNA:   3'- aaCUCCuCCCGua-----UGACCCU--CGGUCg -5'
33503 3' -57.7 NC_007605.1 + 53349 1.08 0.00212
Target:  5'- cUUGAGGAGGGCAUACUGGGAGCCAGCc -3'
miRNA:   3'- -AACUCCUCCCGUAUGACCCUCGGUCG- -5'
33503 3' -57.7 NC_007605.1 + 55887 0.69 0.680713
Target:  5'- cUGaAGGGGGGCaAUGCUGGG-GUCGu- -3'
miRNA:   3'- aAC-UCCUCCCG-UAUGACCCuCGGUcg -5'
33503 3' -57.7 NC_007605.1 + 55992 0.67 0.787844
Target:  5'- aUGaAGGAGGGCugguugGGGAGCUAc- -3'
miRNA:   3'- aAC-UCCUCCCGuauga-CCCUCGGUcg -5'
33503 3' -57.7 NC_007605.1 + 56265 0.76 0.29872
Target:  5'- -aGAGGuuGGGCcacGCUGGGAGuCCGGCc -3'
miRNA:   3'- aaCUCCu-CCCGua-UGACCCUC-GGUCG- -5'
33503 3' -57.7 NC_007605.1 + 57895 0.69 0.639918
Target:  5'- -gGAGGuGGGCuucUugUGGGGGCUAu- -3'
miRNA:   3'- aaCUCCuCCCGu--AugACCCUCGGUcg -5'
33503 3' -57.7 NC_007605.1 + 58040 0.69 0.670552
Target:  5'- -aGGGGAGGGCuggagGCcGGG-GCC-GCg -3'
miRNA:   3'- aaCUCCUCCCGua---UGaCCCuCGGuCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.