miRNA display CGI


Results 61 - 80 of 141 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33503 3' -57.7 NC_007605.1 + 107444 0.69 0.670552
Target:  5'- aUGGuGGGGGacaugGUGCUGGGAGCCGu- -3'
miRNA:   3'- aACUcCUCCCg----UAUGACCCUCGGUcg -5'
33503 3' -57.7 NC_007605.1 + 109506 0.66 0.831672
Target:  5'- gUGGGGgcGGGGCcgGCggGGGAGagGGUg -3'
miRNA:   3'- aACUCC--UCCCGuaUGa-CCCUCggUCG- -5'
33503 3' -57.7 NC_007605.1 + 109855 0.66 0.847989
Target:  5'- gUGcAGGAGGcg--GCgGGGAGCCGGg -3'
miRNA:   3'- aAC-UCCUCCcguaUGaCCCUCGGUCg -5'
33503 3' -57.7 NC_007605.1 + 110248 0.68 0.730736
Target:  5'- gUUGGGGuAGGGgAuuUugUGGGuggAGUCAGCg -3'
miRNA:   3'- -AACUCC-UCCCgU--AugACCC---UCGGUCG- -5'
33503 3' -57.7 NC_007605.1 + 116275 0.69 0.660361
Target:  5'- -cGAGauGGGCAaccgGCUGacgcuGGAGCCAGCg -3'
miRNA:   3'- aaCUCcuCCCGUa---UGAC-----CCUCGGUCG- -5'
33503 3' -57.7 NC_007605.1 + 117142 0.67 0.787844
Target:  5'- -gGAGGAGGGCGaGgaGcGGAGgaAGCg -3'
miRNA:   3'- aaCUCCUCCCGUaUgaC-CCUCggUCG- -5'
33503 3' -57.7 NC_007605.1 + 121243 0.66 0.839925
Target:  5'- ----cGGGGGC--GCUGGcGGCCGGCg -3'
miRNA:   3'- aacucCUCCCGuaUGACCcUCGGUCG- -5'
33503 3' -57.7 NC_007605.1 + 122452 0.73 0.425254
Target:  5'- ---uGGAGGGUggGCuUGGGcAGCCGGCg -3'
miRNA:   3'- aacuCCUCCCGuaUG-ACCC-UCGGUCG- -5'
33503 3' -57.7 NC_007605.1 + 131653 0.68 0.710918
Target:  5'- -gGAGG-GGGCGUcCcGGGAccccagcccccaGCCGGCa -3'
miRNA:   3'- aaCUCCuCCCGUAuGaCCCU------------CGGUCG- -5'
33503 3' -57.7 NC_007605.1 + 131800 0.68 0.730736
Target:  5'- -gGGGGAGGGaucggcgggGCUGGGGuCCAGg -3'
miRNA:   3'- aaCUCCUCCCgua------UGACCCUcGGUCg -5'
33503 3' -57.7 NC_007605.1 + 135171 0.69 0.650146
Target:  5'- cUGAGGugguGGGgGUGgUGGGGGCgGGg -3'
miRNA:   3'- aACUCCu---CCCgUAUgACCCUCGgUCg -5'
33503 3' -57.7 NC_007605.1 + 135272 0.66 0.830837
Target:  5'- gUGGGGGGGGUggugggaGUGgUGGGGGCa--- -3'
miRNA:   3'- aACUCCUCCCG-------UAUgACCCUCGgucg -5'
33503 3' -57.7 NC_007605.1 + 136145 0.66 0.847989
Target:  5'- -aGAGGAGGG---GCUGGG-GCUaaaaaugaaaaAGCa -3'
miRNA:   3'- aaCUCCUCCCguaUGACCCuCGG-----------UCG- -5'
33503 3' -57.7 NC_007605.1 + 136786 0.68 0.710918
Target:  5'- cUGAGG-GGGCucgGgUGGGAGgCGGg -3'
miRNA:   3'- aACUCCuCCCGua-UgACCCUCgGUCg -5'
33503 3' -57.7 NC_007605.1 + 137393 0.67 0.750212
Target:  5'- -cGAGGAGGcGCcagGCgcgGGGccGGUCGGCu -3'
miRNA:   3'- aaCUCCUCC-CGua-UGa--CCC--UCGGUCG- -5'
33503 3' -57.7 NC_007605.1 + 137446 0.67 0.759798
Target:  5'- ---uGGGGGGCcuGUGgUGGuGAGCCuGCu -3'
miRNA:   3'- aacuCCUCCCG--UAUgACC-CUCGGuCG- -5'
33503 3' -57.7 NC_007605.1 + 138012 0.71 0.558509
Target:  5'- gUGcAGGGGGGCAggcggcccUACUGGGGaCCGGg -3'
miRNA:   3'- aAC-UCCUCCCGU--------AUGACCCUcGGUCg -5'
33503 3' -57.7 NC_007605.1 + 138070 0.68 0.710918
Target:  5'- -cGGGGAGGGgGggagGCUGGGGuGgCAGg -3'
miRNA:   3'- aaCUCCUCCCgUa---UGACCCU-CgGUCg -5'
33503 3' -57.7 NC_007605.1 + 138279 0.73 0.425254
Target:  5'- cUGAGGAGGGCAUGaagccCUGGcugaugcaacuuGAGgCAGCc -3'
miRNA:   3'- aACUCCUCCCGUAU-----GACC------------CUCgGUCG- -5'
33503 3' -57.7 NC_007605.1 + 139855 0.68 0.710918
Target:  5'- cUGAGG-GGGCucgGgUGGGAGgCGGg -3'
miRNA:   3'- aACUCCuCCCGua-UgACCCUCgGUCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.