miRNA display CGI


Results 81 - 100 of 141 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33503 3' -57.7 NC_007605.1 + 140462 0.67 0.750212
Target:  5'- -cGAGGAGGcGCcagGCgcgGGGccGGUCGGCu -3'
miRNA:   3'- aaCUCCUCC-CGua-UGa--CCC--UCGGUCG- -5'
33503 3' -57.7 NC_007605.1 + 140515 0.67 0.759798
Target:  5'- ---uGGGGGGCcuGUGgUGGuGAGCCuGCu -3'
miRNA:   3'- aacuCCUCCCG--UAUgACC-CUCGGuCG- -5'
33503 3' -57.7 NC_007605.1 + 141081 0.71 0.558509
Target:  5'- gUGcAGGGGGGCAggcggcccUACUGGGGaCCGGg -3'
miRNA:   3'- aAC-UCCUCCCGU--------AUGACCCUcGGUCg -5'
33503 3' -57.7 NC_007605.1 + 141139 0.68 0.710918
Target:  5'- -cGGGGAGGGgGggagGCUGGGGuGgCAGg -3'
miRNA:   3'- aaCUCCUCCCgUa---UGACCCU-CgGUCg -5'
33503 3' -57.7 NC_007605.1 + 141348 0.73 0.425254
Target:  5'- cUGAGGAGGGCAUGaagccCUGGcugaugcaacuuGAGgCAGCc -3'
miRNA:   3'- aACUCCUCCCGUAU-----GACC------------CUCgGUCG- -5'
33503 3' -57.7 NC_007605.1 + 142924 0.68 0.710918
Target:  5'- cUGAGG-GGGCucgGgUGGGAGgCGGg -3'
miRNA:   3'- aACUCCuCCCGua-UgACCCUCgGUCg -5'
33503 3' -57.7 NC_007605.1 + 143220 0.67 0.778624
Target:  5'- --aAGGAcgccGGGCcgGCUGGGAgGUguGCa -3'
miRNA:   3'- aacUCCU----CCCGuaUGACCCU-CGguCG- -5'
33503 3' -57.7 NC_007605.1 + 143531 0.67 0.750212
Target:  5'- -cGAGGAGGcGCcagGCgcgGGGccGGUCGGCu -3'
miRNA:   3'- aaCUCCUCC-CGua-UGa--CCC--UCGGUCG- -5'
33503 3' -57.7 NC_007605.1 + 143584 0.67 0.759798
Target:  5'- ---uGGGGGGCcuGUGgUGGuGAGCCuGCu -3'
miRNA:   3'- aacuCCUCCCG--UAUgACC-CUCGGuCG- -5'
33503 3' -57.7 NC_007605.1 + 144150 0.71 0.558509
Target:  5'- gUGcAGGGGGGCAggcggcccUACUGGGGaCCGGg -3'
miRNA:   3'- aAC-UCCUCCCGU--------AUGACCCUcGGUCg -5'
33503 3' -57.7 NC_007605.1 + 144208 0.68 0.710918
Target:  5'- -cGGGGAGGGgGggagGCUGGGGuGgCAGg -3'
miRNA:   3'- aaCUCCUCCCgUa---UGACCCU-CgGUCg -5'
33503 3' -57.7 NC_007605.1 + 144208 0.67 0.787844
Target:  5'- uUUGGGGAGuGGUuUugUGuGAGCCGGa -3'
miRNA:   3'- -AACUCCUC-CCGuAugACcCUCGGUCg -5'
33503 3' -57.7 NC_007605.1 + 144417 0.73 0.425254
Target:  5'- cUGAGGAGGGCAUGaagccCUGGcugaugcaacuuGAGgCAGCc -3'
miRNA:   3'- aACUCCUCCCGUAU-----GACC------------CUCgGUCG- -5'
33503 3' -57.7 NC_007605.1 + 145993 0.68 0.710918
Target:  5'- cUGAGG-GGGCucgGgUGGGAGgCGGg -3'
miRNA:   3'- aACUCCuCCCGua-UgACCCUCgGUCg -5'
33503 3' -57.7 NC_007605.1 + 146600 0.67 0.750212
Target:  5'- -cGAGGAGGcGCcagGCgcgGGGccGGUCGGCu -3'
miRNA:   3'- aaCUCCUCC-CGua-UGa--CCC--UCGGUCG- -5'
33503 3' -57.7 NC_007605.1 + 146653 0.67 0.759798
Target:  5'- ---uGGGGGGCcuGUGgUGGuGAGCCuGCu -3'
miRNA:   3'- aacuCCUCCCG--UAUgACC-CUCGGuCG- -5'
33503 3' -57.7 NC_007605.1 + 147219 0.71 0.558509
Target:  5'- gUGcAGGGGGGCAggcggcccUACUGGGGaCCGGg -3'
miRNA:   3'- aAC-UCCUCCCGU--------AUGACCCUcGGUCg -5'
33503 3' -57.7 NC_007605.1 + 147277 0.68 0.710918
Target:  5'- -cGGGGAGGGgGggagGCUGGGGuGgCAGg -3'
miRNA:   3'- aaCUCCUCCCgUa---UGACCCU-CgGUCg -5'
33503 3' -57.7 NC_007605.1 + 147486 0.73 0.425254
Target:  5'- cUGAGGAGGGCAUGaagccCUGGcugaugcaacuuGAGgCAGCc -3'
miRNA:   3'- aACUCCUCCCGUAU-----GACC------------CUCgGUCG- -5'
33503 3' -57.7 NC_007605.1 + 148491 0.68 0.700905
Target:  5'- aUGGGGGGugugguauGGCAcagGCUGGGGGUgAGUc -3'
miRNA:   3'- aACUCCUC--------CCGUa--UGACCCUCGgUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.