Results 101 - 120 of 141 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33503 | 3' | -57.7 | NC_007605.1 | + | 149062 | 0.68 | 0.710918 |
Target: 5'- cUGAGG-GGGCucgGgUGGGAGgCGGg -3' miRNA: 3'- aACUCCuCCCGua-UgACCCUCgGUCg -5' |
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33503 | 3' | -57.7 | NC_007605.1 | + | 149669 | 0.67 | 0.750212 |
Target: 5'- -cGAGGAGGcGCcagGCgcgGGGccGGUCGGCu -3' miRNA: 3'- aaCUCCUCC-CGua-UGa--CCC--UCGGUCG- -5' |
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33503 | 3' | -57.7 | NC_007605.1 | + | 149721 | 0.67 | 0.759798 |
Target: 5'- ---uGGGGGGCcuGUGgUGGuGAGCCuGCu -3' miRNA: 3'- aacuCCUCCCG--UAUgACC-CUCGGuCG- -5' |
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33503 | 3' | -57.7 | NC_007605.1 | + | 150288 | 0.71 | 0.558509 |
Target: 5'- gUGcAGGGGGGCAggcggcccUACUGGGGaCCGGg -3' miRNA: 3'- aAC-UCCUCCCGU--------AUGACCCUcGGUCg -5' |
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33503 | 3' | -57.7 | NC_007605.1 | + | 150346 | 0.68 | 0.710918 |
Target: 5'- -cGGGGAGGGgGggagGCUGGGGuGgCAGg -3' miRNA: 3'- aaCUCCUCCCgUa---UGACCCU-CgGUCg -5' |
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33503 | 3' | -57.7 | NC_007605.1 | + | 150555 | 0.73 | 0.425254 |
Target: 5'- cUGAGGAGGGCAUGaagccCUGGcugaugcaacuuGAGgCAGCc -3' miRNA: 3'- aACUCCUCCCGUAU-----GACC------------CUCgGUCG- -5' |
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33503 | 3' | -57.7 | NC_007605.1 | + | 152131 | 0.68 | 0.710918 |
Target: 5'- cUGAGG-GGGCucgGgUGGGAGgCGGg -3' miRNA: 3'- aACUCCuCCCGua-UgACCCUCgGUCg -5' |
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33503 | 3' | -57.7 | NC_007605.1 | + | 152737 | 0.67 | 0.750212 |
Target: 5'- -cGAGGAGGcGCcagGCgcgGGGccGGUCGGCu -3' miRNA: 3'- aaCUCCUCC-CGua-UGa--CCC--UCGGUCG- -5' |
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33503 | 3' | -57.7 | NC_007605.1 | + | 152790 | 0.67 | 0.759798 |
Target: 5'- ---uGGGGGGCcuGUGgUGGuGAGCCuGCu -3' miRNA: 3'- aacuCCUCCCG--UAUgACC-CUCGGuCG- -5' |
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33503 | 3' | -57.7 | NC_007605.1 | + | 153357 | 0.71 | 0.558509 |
Target: 5'- gUGcAGGGGGGCAggcggcccUACUGGGGaCCGGg -3' miRNA: 3'- aAC-UCCUCCCGU--------AUGACCCUcGGUCg -5' |
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33503 | 3' | -57.7 | NC_007605.1 | + | 153415 | 0.68 | 0.710918 |
Target: 5'- -cGGGGAGGGgGggagGCUGGGGuGgCAGg -3' miRNA: 3'- aaCUCCUCCCgUa---UGACCCU-CgGUCg -5' |
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33503 | 3' | -57.7 | NC_007605.1 | + | 153624 | 0.73 | 0.425254 |
Target: 5'- cUGAGGAGGGCAUGaagccCUGGcugaugcaacuuGAGgCAGCc -3' miRNA: 3'- aACUCCUCCCGUAU-----GACC------------CUCgGUCG- -5' |
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33503 | 3' | -57.7 | NC_007605.1 | + | 153903 | 0.68 | 0.690833 |
Target: 5'- gUUGAGGGGcgcccaGGCGUccggGgaGGGGGCCAGg -3' miRNA: 3'- -AACUCCUC------CCGUA----UgaCCCUCGGUCg -5' |
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33503 | 3' | -57.7 | NC_007605.1 | + | 155200 | 0.68 | 0.710918 |
Target: 5'- cUGAGG-GGGCucgGgUGGGAGgCGGg -3' miRNA: 3'- aACUCCuCCCGua-UgACCCUCgGUCg -5' |
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33503 | 3' | -57.7 | NC_007605.1 | + | 155806 | 0.67 | 0.750212 |
Target: 5'- -cGAGGAGGcGCcagGCgcgGGGccGGUCGGCu -3' miRNA: 3'- aaCUCCUCC-CGua-UGa--CCC--UCGGUCG- -5' |
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33503 | 3' | -57.7 | NC_007605.1 | + | 155859 | 0.67 | 0.759798 |
Target: 5'- ---uGGGGGGCcuGUGgUGGuGAGCCuGCu -3' miRNA: 3'- aacuCCUCCCG--UAUgACC-CUCGGuCG- -5' |
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33503 | 3' | -57.7 | NC_007605.1 | + | 156426 | 0.71 | 0.558509 |
Target: 5'- gUGcAGGGGGGCAggcggcccUACUGGGGaCCGGg -3' miRNA: 3'- aAC-UCCUCCCGU--------AUGACCCUcGGUCg -5' |
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33503 | 3' | -57.7 | NC_007605.1 | + | 156484 | 0.68 | 0.710918 |
Target: 5'- -cGGGGAGGGgGggagGCUGGGGuGgCAGg -3' miRNA: 3'- aaCUCCUCCCgUa---UGACCCU-CgGUCg -5' |
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33503 | 3' | -57.7 | NC_007605.1 | + | 156692 | 0.73 | 0.425254 |
Target: 5'- cUGAGGAGGGCAUGaagccCUGGcugaugcaacuuGAGgCAGCc -3' miRNA: 3'- aACUCCUCCCGUAU-----GACC------------CUCgGUCG- -5' |
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33503 | 3' | -57.7 | NC_007605.1 | + | 158269 | 0.68 | 0.710918 |
Target: 5'- cUGAGG-GGGCucgGgUGGGAGgCGGg -3' miRNA: 3'- aACUCCuCCCGua-UgACCCUCgGUCg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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