miRNA display CGI


Results 121 - 140 of 141 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33503 3' -57.7 NC_007605.1 + 158875 0.67 0.750212
Target:  5'- -cGAGGAGGcGCcagGCgcgGGGccGGUCGGCu -3'
miRNA:   3'- aaCUCCUCC-CGua-UGa--CCC--UCGGUCG- -5'
33503 3' -57.7 NC_007605.1 + 158928 0.67 0.759798
Target:  5'- ---uGGGGGGCcuGUGgUGGuGAGCCuGCu -3'
miRNA:   3'- aacuCCUCCCG--UAUgACC-CUCGGuCG- -5'
33503 3' -57.7 NC_007605.1 + 159495 0.71 0.558509
Target:  5'- gUGcAGGGGGGCAggcggcccUACUGGGGaCCGGg -3'
miRNA:   3'- aAC-UCCUCCCGU--------AUGACCCUcGGUCg -5'
33503 3' -57.7 NC_007605.1 + 159553 0.68 0.710918
Target:  5'- -cGGGGAGGGgGggagGCUGGGGuGgCAGg -3'
miRNA:   3'- aaCUCCUCCCgUa---UGACCCU-CgGUCg -5'
33503 3' -57.7 NC_007605.1 + 160870 0.77 0.272015
Target:  5'- cUGGuGGGGGGCAU-CUGGGGGCCcuuguugguAGCu -3'
miRNA:   3'- aACU-CCUCCCGUAuGACCCUCGG---------UCG- -5'
33503 3' -57.7 NC_007605.1 + 165888 0.72 0.48027
Target:  5'- cUGAGGAGGGCuggGCccGGGGCUAGg -3'
miRNA:   3'- aACUCCUCCCGua-UGacCCUCGGUCg -5'
33503 3' -57.7 NC_007605.1 + 169685 0.67 0.796924
Target:  5'- aUGAGG-GGGCAgggucGCaGGGGGUguGUc -3'
miRNA:   3'- aACUCCuCCCGUa----UGaCCCUCGguCG- -5'
33503 3' -57.7 NC_007605.1 + 169728 0.71 0.558509
Target:  5'- -aGcGGGGGGCGgcgcGGGAGCCuGCa -3'
miRNA:   3'- aaCuCCUCCCGUaugaCCCUCGGuCG- -5'
33503 3' -57.7 NC_007605.1 + 169830 0.69 0.670552
Target:  5'- --aAGGGGGGCg----GGGAGCgGGCa -3'
miRNA:   3'- aacUCCUCCCGuaugaCCCUCGgUCG- -5'
33503 3' -57.7 NC_007605.1 + 169999 0.71 0.518807
Target:  5'- -gGGGGuGGGGCAUG--GGGGGCCGcGCa -3'
miRNA:   3'- aaCUCC-UCCCGUAUgaCCCUCGGU-CG- -5'
33503 3' -57.7 NC_007605.1 + 170223 0.67 0.796924
Target:  5'- aUGAGG-GGGCAgggucGCaGGGGGUguGUc -3'
miRNA:   3'- aACUCCuCCCGUa----UGaCCCUCGguCG- -5'
33503 3' -57.7 NC_007605.1 + 170266 0.71 0.558509
Target:  5'- -aGcGGGGGGCGgcgcGGGAGCCuGCa -3'
miRNA:   3'- aaCuCCUCCCGUaugaCCCUCGGuCG- -5'
33503 3' -57.7 NC_007605.1 + 170368 0.69 0.670552
Target:  5'- --aAGGGGGGCg----GGGAGCgGGCa -3'
miRNA:   3'- aacUCCUCCCGuaugaCCCUCGgUCG- -5'
33503 3' -57.7 NC_007605.1 + 170745 0.67 0.796924
Target:  5'- aUGAGG-GGGCAgggucGCaGGGGGUguGUc -3'
miRNA:   3'- aACUCCuCCCGUa----UGaCCCUCGguCG- -5'
33503 3' -57.7 NC_007605.1 + 170788 0.71 0.558509
Target:  5'- -aGcGGGGGGCGgcgcGGGAGCCuGCa -3'
miRNA:   3'- aaCuCCUCCCGUaugaCCCUCGGuCG- -5'
33503 3' -57.7 NC_007605.1 + 170890 0.69 0.670552
Target:  5'- --aAGGGGGGCg----GGGAGCgGGCa -3'
miRNA:   3'- aacUCCUCCCGuaugaCCCUCGgUCG- -5'
33503 3' -57.7 NC_007605.1 + 171059 0.71 0.518807
Target:  5'- -gGGGGuGGGGCAUG--GGGGGCCGcGCa -3'
miRNA:   3'- aaCUCC-UCCCGUAUgaCCCUCGGU-CG- -5'
33503 3' -57.7 NC_007605.1 + 171283 0.67 0.796924
Target:  5'- aUGAGG-GGGCAgggucGCaGGGGGUguGUc -3'
miRNA:   3'- aACUCCuCCCGUa----UGaCCCUCGguCG- -5'
33503 3' -57.7 NC_007605.1 + 171326 0.71 0.558509
Target:  5'- -aGcGGGGGGCGgcgcGGGAGCCuGCa -3'
miRNA:   3'- aaCuCCUCCCGUaugaCCCUCGGuCG- -5'
33503 3' -57.7 NC_007605.1 + 171428 0.69 0.670552
Target:  5'- --aAGGGGGGCg----GGGAGCgGGCa -3'
miRNA:   3'- aacUCCUCCCGuaugaCCCUCGgUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.