miRNA display CGI


Results 81 - 100 of 141 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33503 3' -57.7 NC_007605.1 + 107444 0.69 0.670552
Target:  5'- aUGGuGGGGGacaugGUGCUGGGAGCCGu- -3'
miRNA:   3'- aACUcCUCCCg----UAUGACCCUCGGUcg -5'
33503 3' -57.7 NC_007605.1 + 106444 0.66 0.81463
Target:  5'- gUUGAccacGGGGGGCuc-CaGGGAGCCuccaAGCg -3'
miRNA:   3'- -AACU----CCUCCCGuauGaCCCUCGG----UCG- -5'
33503 3' -57.7 NC_007605.1 + 104296 0.67 0.787844
Target:  5'- cUUGGGGGGuGGUGUGCcauacaaGGGAGCCuGa -3'
miRNA:   3'- -AACUCCUC-CCGUAUGa------CCCUCGGuCg -5'
33503 3' -57.7 NC_007605.1 + 100104 0.84 0.096483
Target:  5'- -aGAGGGGGGCAgaauuUGCggccggGGGAGCCAGUa -3'
miRNA:   3'- aaCUCCUCCCGU-----AUGa-----CCCUCGGUCG- -5'
33503 3' -57.7 NC_007605.1 + 95701 0.67 0.769272
Target:  5'- -cGAGGGucauGGGCucAUGCUGuGGGG-CAGCa -3'
miRNA:   3'- aaCUCCU----CCCG--UAUGAC-CCUCgGUCG- -5'
33503 3' -57.7 NC_007605.1 + 86412 0.7 0.59902
Target:  5'- cUGAGGAGguGGCG---UGGGAGUgGGCg -3'
miRNA:   3'- aACUCCUC--CCGUaugACCCUCGgUCG- -5'
33503 3' -57.7 NC_007605.1 + 86352 0.7 0.59902
Target:  5'- cUGAGGAGguGGCG---UGGGAGUgGGCg -3'
miRNA:   3'- aACUCCUC--CCGUaugACCCUCGgUCG- -5'
33503 3' -57.7 NC_007605.1 + 82902 0.66 0.820674
Target:  5'- -gGGGGAaucuuguuggaaugGGGCGUA-UGGGGGCUcggGGCu -3'
miRNA:   3'- aaCUCCU--------------CCCGUAUgACCCUCGG---UCG- -5'
33503 3' -57.7 NC_007605.1 + 82010 0.68 0.690833
Target:  5'- -gGAGGAGGGCGgg-UGGcAGCC-GCg -3'
miRNA:   3'- aaCUCCUCCCGUaugACCcUCGGuCG- -5'
33503 3' -57.7 NC_007605.1 + 78190 0.67 0.787844
Target:  5'- uUUGGGGuuGGGGUAgucacUGCUGGGguggGGCUGGUg -3'
miRNA:   3'- -AACUCC--UCCCGU-----AUGACCC----UCGGUCG- -5'
33503 3' -57.7 NC_007605.1 + 78148 0.67 0.787844
Target:  5'- uUUGGGGuuGGGGUAgucacUGCUGGGguggGGCUGGUg -3'
miRNA:   3'- -AACUCC--UCCCGU-----AUGACCC----UCGGUCG- -5'
33503 3' -57.7 NC_007605.1 + 76617 0.66 0.839108
Target:  5'- --aGGGAaacgaugGGGCAaACUGGGGGaaCAGCa -3'
miRNA:   3'- aacUCCU-------CCCGUaUGACCCUCg-GUCG- -5'
33503 3' -57.7 NC_007605.1 + 76507 0.77 0.265016
Target:  5'- cUGGGGAagcgaugGGGCAUACUgGGGAGaCGGCg -3'
miRNA:   3'- aACUCCU-------CCCGUAUGA-CCCUCgGUCG- -5'
33503 3' -57.7 NC_007605.1 + 75767 0.7 0.629683
Target:  5'- cUGGGGGGuGGCAUAuCUGaaGGcAGCCAGg -3'
miRNA:   3'- aACUCCUC-CCGUAU-GAC--CC-UCGGUCg -5'
33503 3' -57.7 NC_007605.1 + 73364 0.71 0.547494
Target:  5'- gUG-GGGGGGUAUG-UGGGAcccucauccgcguGCCAGCg -3'
miRNA:   3'- aACuCCUCCCGUAUgACCCU-------------CGGUCG- -5'
33503 3' -57.7 NC_007605.1 + 73107 0.67 0.786929
Target:  5'- cUGGGGuguaggagAGGGCccuggugagacacGUGuCUGGGAGgCGGCa -3'
miRNA:   3'- aACUCC--------UCCCG-------------UAU-GACCCUCgGUCG- -5'
33503 3' -57.7 NC_007605.1 + 72344 0.67 0.787844
Target:  5'- -gGAGGGGGGCGgcgu-GGAGCUGGg -3'
miRNA:   3'- aaCUCCUCCCGUaugacCCUCGGUCg -5'
33503 3' -57.7 NC_007605.1 + 71575 0.67 0.750212
Target:  5'- -cGAGGuAGGGguUaugaccacGCUGGaGGGCCGuGCa -3'
miRNA:   3'- aaCUCC-UCCCguA--------UGACC-CUCGGU-CG- -5'
33503 3' -57.7 NC_007605.1 + 62512 0.7 0.59902
Target:  5'- -cGuGGGGGGCAg--UGaGGAuGCCAGCa -3'
miRNA:   3'- aaCuCCUCCCGUaugAC-CCU-CGGUCG- -5'
33503 3' -57.7 NC_007605.1 + 61249 0.69 0.639918
Target:  5'- -aGGGGAGGGCcgGagccGGGGCCGGg -3'
miRNA:   3'- aaCUCCUCCCGuaUgac-CCUCGGUCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.