miRNA display CGI


Results 21 - 40 of 141 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33503 3' -57.7 NC_007605.1 + 107444 0.69 0.670552
Target:  5'- aUGGuGGGGGacaugGUGCUGGGAGCCGu- -3'
miRNA:   3'- aACUcCUCCCg----UAUGACCCUCGGUcg -5'
33503 3' -57.7 NC_007605.1 + 58040 0.69 0.670552
Target:  5'- -aGGGGAGGGCuggagGCcGGG-GCC-GCg -3'
miRNA:   3'- aaCUCCUCCCGua---UGaCCCuCGGuCG- -5'
33503 3' -57.7 NC_007605.1 + 170266 0.71 0.558509
Target:  5'- -aGcGGGGGGCGgcgcGGGAGCCuGCa -3'
miRNA:   3'- aaCuCCUCCCGUaugaCCCUCGGuCG- -5'
33503 3' -57.7 NC_007605.1 + 169728 0.71 0.558509
Target:  5'- -aGcGGGGGGCGgcgcGGGAGCCuGCa -3'
miRNA:   3'- aaCuCCUCCCGUaugaCCCUCGGuCG- -5'
33503 3' -57.7 NC_007605.1 + 73364 0.71 0.547494
Target:  5'- gUG-GGGGGGUAUG-UGGGAcccucauccgcguGCCAGCg -3'
miRNA:   3'- aACuCCUCCCGUAUgACCCU-------------CGGUCG- -5'
33503 3' -57.7 NC_007605.1 + 171059 0.71 0.518807
Target:  5'- -gGGGGuGGGGCAUG--GGGGGCCGcGCa -3'
miRNA:   3'- aaCUCC-UCCCGUAUgaCCCUCGGU-CG- -5'
33503 3' -57.7 NC_007605.1 + 169999 0.71 0.518807
Target:  5'- -gGGGGuGGGGCAUG--GGGGGCCGcGCa -3'
miRNA:   3'- aaCUCC-UCCCGUAUgaCCCUCGGU-CG- -5'
33503 3' -57.7 NC_007605.1 + 51283 0.71 0.518807
Target:  5'- -aGAGG-GGGCucuguggGCUGGGAggGCCAGa -3'
miRNA:   3'- aaCUCCuCCCGua-----UGACCCU--CGGUCg -5'
33503 3' -57.7 NC_007605.1 + 33907 0.74 0.390732
Target:  5'- gUGGGGccGGUcgGCUGGGcuGGCCGGCc -3'
miRNA:   3'- aACUCCucCCGuaUGACCC--UCGGUCG- -5'
33503 3' -57.7 NC_007605.1 + 100104 0.84 0.096483
Target:  5'- -aGAGGGGGGCAgaauuUGCggccggGGGAGCCAGUa -3'
miRNA:   3'- aaCUCCUCCCGU-----AUGa-----CCCUCGGUCG- -5'
33503 3' -57.7 NC_007605.1 + 170788 0.71 0.558509
Target:  5'- -aGcGGGGGGCGgcgcGGGAGCCuGCa -3'
miRNA:   3'- aaCuCCUCCCGUaugaCCCUCGGuCG- -5'
33503 3' -57.7 NC_007605.1 + 171326 0.71 0.558509
Target:  5'- -aGcGGGGGGCGgcgcGGGAGCCuGCa -3'
miRNA:   3'- aaCuCCUCCCGUaugaCCCUCGGuCG- -5'
33503 3' -57.7 NC_007605.1 + 60840 0.69 0.660361
Target:  5'- gUUGAGGGGGcGCAguccgaccgcCUGGGGGgacuccCCGGCa -3'
miRNA:   3'- -AACUCCUCC-CGUau--------GACCCUC------GGUCG- -5'
33503 3' -57.7 NC_007605.1 + 57895 0.69 0.639918
Target:  5'- -gGAGGuGGGCuucUugUGGGGGCUAu- -3'
miRNA:   3'- aaCUCCuCCCGu--AugACCCUCGGUcg -5'
33503 3' -57.7 NC_007605.1 + 61249 0.69 0.639918
Target:  5'- -aGGGGAGGGCcgGagccGGGGCCGGg -3'
miRNA:   3'- aaCUCCUCCCGuaUgac-CCUCGGUCg -5'
33503 3' -57.7 NC_007605.1 + 75767 0.7 0.629683
Target:  5'- cUGGGGGGuGGCAUAuCUGaaGGcAGCCAGg -3'
miRNA:   3'- aACUCCUC-CCGUAU-GAC--CC-UCGGUCg -5'
33503 3' -57.7 NC_007605.1 + 51030 0.7 0.629683
Target:  5'- cUUGAGGGGGGCuGUugUGGu-GCUGGUu -3'
miRNA:   3'- -AACUCCUCCCG-UAugACCcuCGGUCG- -5'
33503 3' -57.7 NC_007605.1 + 62512 0.7 0.59902
Target:  5'- -cGuGGGGGGCAg--UGaGGAuGCCAGCa -3'
miRNA:   3'- aaCuCCUCCCGUaugAC-CCU-CGGUCG- -5'
33503 3' -57.7 NC_007605.1 + 40176 0.7 0.588838
Target:  5'- gUGAGGgaGGGGCGUGgucCUGGGAcCCcGCg -3'
miRNA:   3'- aACUCC--UCCCGUAU---GACCCUcGGuCG- -5'
33503 3' -57.7 NC_007605.1 + 48449 0.71 0.568576
Target:  5'- -aGGGGAGGaGCucg-UGGGGGCCGGg -3'
miRNA:   3'- aaCUCCUCC-CGuaugACCCUCGGUCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.