miRNA display CGI


Results 101 - 120 of 141 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33503 3' -57.7 NC_007605.1 + 12295 0.76 0.285121
Target:  5'- cUGGGGGGacguGGUcUACUGGGAGCUGGCc -3'
miRNA:   3'- aACUCCUC----CCGuAUGACCCUCGGUCG- -5'
33503 3' -57.7 NC_007605.1 + 160870 0.77 0.272015
Target:  5'- cUGGuGGGGGGCAU-CUGGGGGCCcuuguugguAGCu -3'
miRNA:   3'- aACU-CCUCCCGUAuGACCCUCGG---------UCG- -5'
33503 3' -57.7 NC_007605.1 + 141081 0.71 0.558509
Target:  5'- gUGcAGGGGGGCAggcggcccUACUGGGGaCCGGg -3'
miRNA:   3'- aAC-UCCUCCCGU--------AUGACCCUcGGUCg -5'
33503 3' -57.7 NC_007605.1 + 144150 0.71 0.558509
Target:  5'- gUGcAGGGGGGCAggcggcccUACUGGGGaCCGGg -3'
miRNA:   3'- aAC-UCCUCCCGU--------AUGACCCUcGGUCg -5'
33503 3' -57.7 NC_007605.1 + 147219 0.71 0.558509
Target:  5'- gUGcAGGGGGGCAggcggcccUACUGGGGaCCGGg -3'
miRNA:   3'- aAC-UCCUCCCGU--------AUGACCCUcGGUCg -5'
33503 3' -57.7 NC_007605.1 + 11621 0.68 0.710918
Target:  5'- -aGAGGAGGGCGcggucccggGCccgGGGcGGCCGGa -3'
miRNA:   3'- aaCUCCUCCCGUa--------UGa--CCC-UCGGUCg -5'
33503 3' -57.7 NC_007605.1 + 46036 0.68 0.704917
Target:  5'- --cAGGGGGGgAUcCUGGuaaccugauucagauGAGCCAGCa -3'
miRNA:   3'- aacUCCUCCCgUAuGACC---------------CUCGGUCG- -5'
33503 3' -57.7 NC_007605.1 + 82010 0.68 0.690833
Target:  5'- -gGAGGAGGGCGgg-UGGcAGCC-GCg -3'
miRNA:   3'- aaCUCCUCCCGUaugACCcUCGGuCG- -5'
33503 3' -57.7 NC_007605.1 + 20984 0.69 0.680713
Target:  5'- -cGAGGAGGGCuggguCUGcgacguucugcuGGAGCCcgGGCc -3'
miRNA:   3'- aaCUCCUCCCGuau--GAC------------CCUCGG--UCG- -5'
33503 3' -57.7 NC_007605.1 + 116275 0.69 0.660361
Target:  5'- -cGAGauGGGCAaccgGCUGacgcuGGAGCCAGCg -3'
miRNA:   3'- aaCUCcuCCCGUa---UGAC-----CCUCGGUCG- -5'
33503 3' -57.7 NC_007605.1 + 135171 0.69 0.650146
Target:  5'- cUGAGGugguGGGgGUGgUGGGGGCgGGg -3'
miRNA:   3'- aACUCCu---CCCgUAUgACCCUCGgUCg -5'
33503 3' -57.7 NC_007605.1 + 15712 0.69 0.639918
Target:  5'- -cGAGGAuggaaaGGGCAUG-UGGuGGcGCCAGCg -3'
miRNA:   3'- aaCUCCU------CCCGUAUgACC-CU-CGGUCG- -5'
33503 3' -57.7 NC_007605.1 + 86412 0.7 0.59902
Target:  5'- cUGAGGAGguGGCG---UGGGAGUgGGCg -3'
miRNA:   3'- aACUCCUC--CCGUaugACCCUCGgUCG- -5'
33503 3' -57.7 NC_007605.1 + 86352 0.7 0.59902
Target:  5'- cUGAGGAGguGGCG---UGGGAGUgGGCg -3'
miRNA:   3'- aACUCCUC--CCGUaugACCCUCGgUCG- -5'
33503 3' -57.7 NC_007605.1 + 38302 0.7 0.578688
Target:  5'- aUGGGGAGGGCGggGCUGGc-GCagAGCg -3'
miRNA:   3'- aACUCCUCCCGUa-UGACCcuCGg-UCG- -5'
33503 3' -57.7 NC_007605.1 + 42409 0.71 0.558509
Target:  5'- aUUGGGGAGGuuuUGC-GGGGGCUAGCc -3'
miRNA:   3'- -AACUCCUCCcguAUGaCCCUCGGUCG- -5'
33503 3' -57.7 NC_007605.1 + 159495 0.71 0.558509
Target:  5'- gUGcAGGGGGGCAggcggcccUACUGGGGaCCGGg -3'
miRNA:   3'- aAC-UCCUCCCGU--------AUGACCCUcGGUCg -5'
33503 3' -57.7 NC_007605.1 + 156426 0.71 0.558509
Target:  5'- gUGcAGGGGGGCAggcggcccUACUGGGGaCCGGg -3'
miRNA:   3'- aAC-UCCUCCCGU--------AUGACCCUcGGUCg -5'
33503 3' -57.7 NC_007605.1 + 153357 0.71 0.558509
Target:  5'- gUGcAGGGGGGCAggcggcccUACUGGGGaCCGGg -3'
miRNA:   3'- aAC-UCCUCCCGU--------AUGACCCUcGGUCg -5'
33503 3' -57.7 NC_007605.1 + 150288 0.71 0.558509
Target:  5'- gUGcAGGGGGGCAggcggcccUACUGGGGaCCGGg -3'
miRNA:   3'- aAC-UCCUCCCGU--------AUGACCCUcGGUCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.