miRNA display CGI


Results 81 - 100 of 141 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33503 3' -57.7 NC_007605.1 + 55992 0.67 0.787844
Target:  5'- aUGaAGGAGGGCugguugGGGAGCUAc- -3'
miRNA:   3'- aAC-UCCUCCCGuauga-CCCUCGGUcg -5'
33503 3' -57.7 NC_007605.1 + 158875 0.67 0.750212
Target:  5'- -cGAGGAGGcGCcagGCgcgGGGccGGUCGGCu -3'
miRNA:   3'- aaCUCCUCC-CGua-UGa--CCC--UCGGUCG- -5'
33503 3' -57.7 NC_007605.1 + 109855 0.66 0.847989
Target:  5'- gUGcAGGAGGcg--GCgGGGAGCCGGg -3'
miRNA:   3'- aAC-UCCUCCcguaUGaCCCUCGGUCg -5'
33503 3' -57.7 NC_007605.1 + 121243 0.66 0.839925
Target:  5'- ----cGGGGGC--GCUGGcGGCCGGCg -3'
miRNA:   3'- aacucCUCCCGuaUGACCcUCGGUCG- -5'
33503 3' -57.7 NC_007605.1 + 37898 0.66 0.839925
Target:  5'- -gGAGG-GGGCGcUGCUGGugugagGAGCCcccuggaguAGCa -3'
miRNA:   3'- aaCUCCuCCCGU-AUGACC------CUCGG---------UCG- -5'
33503 3' -57.7 NC_007605.1 + 135272 0.66 0.830837
Target:  5'- gUGGGGGGGGUggugggaGUGgUGGGGGCa--- -3'
miRNA:   3'- aACUCCUCCCG-------UAUgACCCUCGgucg -5'
33503 3' -57.7 NC_007605.1 + 41855 0.66 0.823238
Target:  5'- aUGaAGGGaGGC-UGCcGGGAGCCGGa -3'
miRNA:   3'- aAC-UCCUcCCGuAUGaCCCUCGGUCg -5'
33503 3' -57.7 NC_007605.1 + 146600 0.67 0.750212
Target:  5'- -cGAGGAGGcGCcagGCgcgGGGccGGUCGGCu -3'
miRNA:   3'- aaCUCCUCC-CGua-UGa--CCC--UCGGUCG- -5'
33503 3' -57.7 NC_007605.1 + 149669 0.67 0.750212
Target:  5'- -cGAGGAGGcGCcagGCgcgGGGccGGUCGGCu -3'
miRNA:   3'- aaCUCCUCC-CGua-UGa--CCC--UCGGUCG- -5'
33503 3' -57.7 NC_007605.1 + 155806 0.67 0.750212
Target:  5'- -cGAGGAGGcGCcagGCgcgGGGccGGUCGGCu -3'
miRNA:   3'- aaCUCCUCC-CGua-UGa--CCC--UCGGUCG- -5'
33503 3' -57.7 NC_007605.1 + 21631 0.68 0.690833
Target:  5'- gUGGGGccGGUcgGCUGGGcuGGCCgAGCc -3'
miRNA:   3'- aACUCCucCCGuaUGACCC--UCGG-UCG- -5'
33503 3' -57.7 NC_007605.1 + 62512 0.7 0.59902
Target:  5'- -cGuGGGGGGCAg--UGaGGAuGCCAGCa -3'
miRNA:   3'- aaCuCCUCCCGUaugAC-CCU-CGGUCG- -5'
33503 3' -57.7 NC_007605.1 + 18562 0.68 0.690833
Target:  5'- gUGGGGccGGUcgGCUGGGcuGGCCgAGCc -3'
miRNA:   3'- aACUCCucCCGuaUGACCC--UCGG-UCG- -5'
33503 3' -57.7 NC_007605.1 + 15493 0.68 0.690833
Target:  5'- gUGGGGccGGUcgGCUGGGcuGGCCgAGCc -3'
miRNA:   3'- aACUCCucCCGuaUGACCC--UCGG-UCG- -5'
33503 3' -57.7 NC_007605.1 + 12424 0.68 0.690833
Target:  5'- gUGGGGccGGUcgGCUGGGcuGGCCgAGCc -3'
miRNA:   3'- aACUCCucCCGuaUGACCC--UCGG-UCG- -5'
33503 3' -57.7 NC_007605.1 + 24700 0.68 0.690833
Target:  5'- gUGGGGccGGUcgGCUGGGcuGGCCgAGCc -3'
miRNA:   3'- aACUCCucCCGuaUGACCC--UCGG-UCG- -5'
33503 3' -57.7 NC_007605.1 + 40176 0.7 0.588838
Target:  5'- gUGAGGgaGGGGCGUGgucCUGGGAcCCcGCg -3'
miRNA:   3'- aACUCC--UCCCGUAU---GACCCUcGGuCG- -5'
33503 3' -57.7 NC_007605.1 + 55887 0.69 0.680713
Target:  5'- cUGaAGGGGGGCaAUGCUGGG-GUCGu- -3'
miRNA:   3'- aAC-UCCUCCCG-UAUGACCCuCGGUcg -5'
33503 3' -57.7 NC_007605.1 + 50380 0.66 0.839925
Target:  5'- -cGAGGAcGGGC--GCcGGccGCCAGCg -3'
miRNA:   3'- aaCUCCU-CCCGuaUGaCCcuCGGUCG- -5'
33503 3' -57.7 NC_007605.1 + 51030 0.7 0.629683
Target:  5'- cUUGAGGGGGGCuGUugUGGu-GCUGGUu -3'
miRNA:   3'- -AACUCCUCCCG-UAugACCcuCGGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.