miRNA display CGI


Results 1 - 20 of 329 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33503 5' -64 NC_007605.1 + 22507 0.66 0.596332
Target:  5'- -aGCCggaGGGaCCCC-GGCAGCCcgggcgagUCGCCu -3'
miRNA:   3'- cgCGG---UCC-GGGGaCCGUCGGa-------GGUGG- -5'
33503 5' -64 NC_007605.1 + 13300 0.66 0.596332
Target:  5'- -aGCCggaGGGaCCCC-GGCAGCCcgggcgagUCGCCu -3'
miRNA:   3'- cgCGG---UCC-GGGGaCCGUCGGa-------GGUGG- -5'
33503 5' -64 NC_007605.1 + 25576 0.66 0.596332
Target:  5'- -aGCCggaGGGaCCCC-GGCAGCCcgggcgagUCGCCu -3'
miRNA:   3'- cgCGG---UCC-GGGGaCCGUCGGa-------GGUGG- -5'
33503 5' -64 NC_007605.1 + 17833 0.66 0.596332
Target:  5'- uGCGCUuuGCcgaugCCCUGGCcGCCcacaCCACCc -3'
miRNA:   3'- -CGCGGucCG-----GGGACCGuCGGa---GGUGG- -5'
33503 5' -64 NC_007605.1 + 136550 0.66 0.596332
Target:  5'- aCGCCGGGCCCgCgGGCGgggacccggguGCCUUCu-- -3'
miRNA:   3'- cGCGGUCCGGG-GaCCGU-----------CGGAGGugg -5'
33503 5' -64 NC_007605.1 + 40236 0.66 0.596332
Target:  5'- -gGCCuagGGGUCCagggGGCAGCCgCgGCCc -3'
miRNA:   3'- cgCGG---UCCGGGga--CCGUCGGaGgUGG- -5'
33503 5' -64 NC_007605.1 + 34783 0.66 0.596332
Target:  5'- -aGCCggaGGGaCCCC-GGCAGCCcgggcgagUCGCCu -3'
miRNA:   3'- cgCGG---UCC-GGGGaCCGUCGGa-------GGUGG- -5'
33503 5' -64 NC_007605.1 + 16369 0.66 0.596332
Target:  5'- -aGCCggaGGGaCCCC-GGCAGCCcgggcgagUCGCCu -3'
miRNA:   3'- cgCGG---UCC-GGGGaCCGUCGGa-------GGUGG- -5'
33503 5' -64 NC_007605.1 + 150137 0.66 0.596332
Target:  5'- aGUGCUgcauGGGCUCCUccggGGUaAGCUUCgGCCa -3'
miRNA:   3'- -CGCGG----UCCGGGGA----CCG-UCGGAGgUGG- -5'
33503 5' -64 NC_007605.1 + 31714 0.66 0.596332
Target:  5'- -aGCCggaGGGaCCCC-GGCAGCCcgggcgagUCGCCu -3'
miRNA:   3'- cgCGG---UCC-GGGGaCCGUCGGa-------GGUGG- -5'
33503 5' -64 NC_007605.1 + 28645 0.66 0.596332
Target:  5'- -aGCCggaGGGaCCCC-GGCAGCCcgggcgagUCGCCu -3'
miRNA:   3'- cgCGG---UCC-GGGGaCCGUCGGa-------GGUGG- -5'
33503 5' -64 NC_007605.1 + 60294 0.66 0.596332
Target:  5'- -gGCCAGGgCCcaCCUGGCGGCggCguCCc -3'
miRNA:   3'- cgCGGUCC-GG--GGACCGUCGgaGguGG- -5'
33503 5' -64 NC_007605.1 + 5305 0.66 0.596332
Target:  5'- uGCuGCguGGCCuCCggGGCuGCgUCCugCc -3'
miRNA:   3'- -CG-CGguCCGG-GGa-CCGuCGgAGGugG- -5'
33503 5' -64 NC_007605.1 + 19438 0.66 0.596332
Target:  5'- -aGCCggaGGGaCCCC-GGCAGCCcgggcgagUCGCCu -3'
miRNA:   3'- cgCGG---UCC-GGGGaCCGUCGGa-------GGUGG- -5'
33503 5' -64 NC_007605.1 + 147053 0.66 0.58672
Target:  5'- --cUCGGGCCCCUGGacuGGUCUCUcaaucuggGCCc -3'
miRNA:   3'- cgcGGUCCGGGGACCg--UCGGAGG--------UGG- -5'
33503 5' -64 NC_007605.1 + 137846 0.66 0.58672
Target:  5'- --cUCGGGCCCCUGGacuGGUCUCUcaaucuggGCCc -3'
miRNA:   3'- cgcGGUCCGGGGACCg--UCGGAGG--------UGG- -5'
33503 5' -64 NC_007605.1 + 143984 0.66 0.58672
Target:  5'- --cUCGGGCCCCUGGacuGGUCUCUcaaucuggGCCc -3'
miRNA:   3'- cgcGGUCCGGGGACCg--UCGGAGG--------UGG- -5'
33503 5' -64 NC_007605.1 + 49493 0.66 0.58672
Target:  5'- uGgGaCCGGGgCCUUGGCAucaucagcGCCgUCCACg -3'
miRNA:   3'- -CgC-GGUCCgGGGACCGU--------CGG-AGGUGg -5'
33503 5' -64 NC_007605.1 + 140915 0.66 0.58672
Target:  5'- --cUCGGGCCCCUGGacuGGUCUCUcaaucuggGCCc -3'
miRNA:   3'- cgcGGUCCGGGGACCg--UCGGAGG--------UGG- -5'
33503 5' -64 NC_007605.1 + 71207 0.66 0.58672
Target:  5'- -gGCagGGGCCUCUGGCugcguucuuGCCU-CGCCu -3'
miRNA:   3'- cgCGg-UCCGGGGACCGu--------CGGAgGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.