miRNA display CGI


Results 1 - 20 of 329 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33503 5' -64 NC_007605.1 + 2674 0.66 0.552401
Target:  5'- cCGCCAccGGCCCCggagcagaugccagGGCGGCggCCcggcGCCa -3'
miRNA:   3'- cGCGGU--CCGGGGa-------------CCGUCGgaGG----UGG- -5'
33503 5' -64 NC_007605.1 + 4050 0.69 0.386072
Target:  5'- cGCGCguGGCCugggcgugaagcugaCCuuUGGCucGGCCUCCugCc -3'
miRNA:   3'- -CGCGguCCGG---------------GG--ACCG--UCGGAGGugG- -5'
33503 5' -64 NC_007605.1 + 4861 0.78 0.112985
Target:  5'- uGCGCCccgggcaccagGGGCCaugaaagccuCCUGGCGGCCUUCACg -3'
miRNA:   3'- -CGCGG-----------UCCGG----------GGACCGUCGGAGGUGg -5'
33503 5' -64 NC_007605.1 + 5004 0.77 0.134207
Target:  5'- gGgGCCAGGgacucugCCCUGGCAgGCCgugCCACCg -3'
miRNA:   3'- -CgCGGUCCg------GGGACCGU-CGGa--GGUGG- -5'
33503 5' -64 NC_007605.1 + 5305 0.66 0.596332
Target:  5'- uGCuGCguGGCCuCCggGGCuGCgUCCugCc -3'
miRNA:   3'- -CG-CGguCCGG-GGa-CCGuCGgAGGugG- -5'
33503 5' -64 NC_007605.1 + 8873 0.7 0.375155
Target:  5'- aGgGCCGGGCCCC-GGCcguguGCCUgaaCACg -3'
miRNA:   3'- -CgCGGUCCGGGGaCCGu----CGGAg--GUGg -5'
33503 5' -64 NC_007605.1 + 10933 0.67 0.539212
Target:  5'- -aGCCAGGUguacgCCCUGGCGGUUgagcugagcgugUgCACCc -3'
miRNA:   3'- cgCGGUCCG-----GGGACCGUCGG------------AgGUGG- -5'
33503 5' -64 NC_007605.1 + 11088 0.68 0.431774
Target:  5'- aGCGCCcuGUCCCUGG-AGCUggUgCACCu -3'
miRNA:   3'- -CGCGGucCGGGGACCgUCGG--AgGUGG- -5'
33503 5' -64 NC_007605.1 + 11144 0.68 0.472472
Target:  5'- cGCGCUgcucGCCCCUGGUagaaaggguacccgGGUC-CCGCCu -3'
miRNA:   3'- -CGCGGuc--CGGGGACCG--------------UCGGaGGUGG- -5'
33503 5' -64 NC_007605.1 + 11630 0.69 0.410158
Target:  5'- cGCGgucCCGGGCCCggGGCGGCCggaggcagagggggCgACCa -3'
miRNA:   3'- -CGC---GGUCCGGGgaCCGUCGGa-------------GgUGG- -5'
33503 5' -64 NC_007605.1 + 12189 0.7 0.366725
Target:  5'- cGgGCCAGGCCaCCUuagacccGGCcaAGCC-CCAUCc -3'
miRNA:   3'- -CgCGGUCCGG-GGA-------CCG--UCGGaGGUGG- -5'
33503 5' -64 NC_007605.1 + 12383 0.68 0.440263
Target:  5'- -gGCaGGGCCCCccGGCAGCUggCC-CCg -3'
miRNA:   3'- cgCGgUCCGGGGa-CCGUCGGa-GGuGG- -5'
33503 5' -64 NC_007605.1 + 12747 0.7 0.375155
Target:  5'- -aGCCGaccGGCCCCgcgccUGGC-GCCUCCucgggGCCa -3'
miRNA:   3'- cgCGGU---CCGGGG-----ACCGuCGGAGG-----UGG- -5'
33503 5' -64 NC_007605.1 + 12789 0.69 0.398802
Target:  5'- uGCGCCGGGCggacgcggucagCCCcGGCcaGGCC-CUGCCc -3'
miRNA:   3'- -CGCGGUCCG------------GGGaCCG--UCGGaGGUGG- -5'
33503 5' -64 NC_007605.1 + 12841 0.66 0.548623
Target:  5'- gGCaccCCAGaGCCCCUcgGGCccGCCUCCAg- -3'
miRNA:   3'- -CGc--GGUC-CGGGGA--CCGu-CGGAGGUgg -5'
33503 5' -64 NC_007605.1 + 12967 0.67 0.493082
Target:  5'- -gGUCAGGgCaCCUcaGGguGCCUCC-CCg -3'
miRNA:   3'- cgCGGUCCgG-GGA--CCguCGGAGGuGG- -5'
33503 5' -64 NC_007605.1 + 13006 0.66 0.577138
Target:  5'- -aGCCggaGGGaCCCC-GGCAGCCcgggCgGCCc -3'
miRNA:   3'- cgCGG---UCC-GGGGaCCGUCGGa---GgUGG- -5'
33503 5' -64 NC_007605.1 + 13300 0.66 0.596332
Target:  5'- -aGCCggaGGGaCCCC-GGCAGCCcgggcgagUCGCCu -3'
miRNA:   3'- cgCGG---UCC-GGGGaCCGUCGGa-------GGUGG- -5'
33503 5' -64 NC_007605.1 + 13482 0.67 0.517787
Target:  5'- gGCGCCAGcuuuucuccccccaGCCUgaGGCccAGUCUCCugUg -3'
miRNA:   3'- -CGCGGUC--------------CGGGgaCCG--UCGGAGGugG- -5'
33503 5' -64 NC_007605.1 + 13555 0.67 0.529858
Target:  5'- cCGuCCAcGGCUCCcgGGCccAGCCucgUCCACCc -3'
miRNA:   3'- cGC-GGU-CCGGGGa-CCG--UCGG---AGGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.