miRNA display CGI


Results 1 - 20 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33508 3' -61.6 NC_007605.1 + 75396 0.66 0.712973
Target:  5'- cCUGCCccuccugCCCCUCCUgC-CCCUCcUCc -3'
miRNA:   3'- aGACGGa------GGGGAGGGaGaGGGAGcAG- -5'
33508 3' -61.6 NC_007605.1 + 75498 0.66 0.712973
Target:  5'- cCUGCCccuccugCCCCUCCUgC-CCCUCcUCc -3'
miRNA:   3'- aGACGGa------GGGGAGGGaGaGGGAGcAG- -5'
33508 3' -61.6 NC_007605.1 + 75723 0.66 0.712973
Target:  5'- cCUGCCccuccugCCCCUCCUgC-CCCUCcUCc -3'
miRNA:   3'- aGACGGa------GGGGAGGGaGaGGGAGcAG- -5'
33508 3' -61.6 NC_007605.1 + 75660 0.66 0.712973
Target:  5'- cCUGCCccuccugCCCCUCCUgC-CCCUCcUCc -3'
miRNA:   3'- aGACGGa------GGGGAGGGaGaGGGAGcAG- -5'
33508 3' -61.6 NC_007605.1 + 75579 0.66 0.712973
Target:  5'- cCUGCCccuccugCCCCUCCUgC-CCCUCcUCc -3'
miRNA:   3'- aGACGGa------GGGGAGGGaGaGGGAGcAG- -5'
33508 3' -61.6 NC_007605.1 + 17602 0.66 0.703392
Target:  5'- aCgGCCUCuuuCCCUgCCUCUCCaUCGcCg -3'
miRNA:   3'- aGaCGGAG---GGGAgGGAGAGGgAGCaG- -5'
33508 3' -61.6 NC_007605.1 + 110997 0.66 0.693755
Target:  5'- cUUGCCUggcCCaCCUCCCUCUuuucacUCCUCuUCa -3'
miRNA:   3'- aGACGGA---GG-GGAGGGAGA------GGGAGcAG- -5'
33508 3' -61.6 NC_007605.1 + 60808 0.66 0.684071
Target:  5'- cCUGCgUCCCCggccuugCCUUCcCCCUCu-- -3'
miRNA:   3'- aGACGgAGGGGa------GGGAGaGGGAGcag -5'
33508 3' -61.6 NC_007605.1 + 113596 0.66 0.684071
Target:  5'- --gGCCUCCag-CCCUC-CCCUCuUCa -3'
miRNA:   3'- agaCGGAGGggaGGGAGaGGGAGcAG- -5'
33508 3' -61.6 NC_007605.1 + 90217 0.66 0.674348
Target:  5'- gCUGCCgCCCCUCCaugagCCCcacCGUCc -3'
miRNA:   3'- aGACGGaGGGGAGGgaga-GGGa--GCAG- -5'
33508 3' -61.6 NC_007605.1 + 90247 0.66 0.674348
Target:  5'- gCUGCCgCCCCUCCUUgagcCCCUCc-- -3'
miRNA:   3'- aGACGGaGGGGAGGGAga--GGGAGcag -5'
33508 3' -61.6 NC_007605.1 + 165527 0.66 0.674348
Target:  5'- cUCUGcCCUCaCCUCa-UCUCuCCUCGUUa -3'
miRNA:   3'- -AGAC-GGAGgGGAGggAGAG-GGAGCAG- -5'
33508 3' -61.6 NC_007605.1 + 59283 0.66 0.674348
Target:  5'- -gUGCCUCCgCCUCuCCUCUgUCUgGg- -3'
miRNA:   3'- agACGGAGG-GGAG-GGAGAgGGAgCag -5'
33508 3' -61.6 NC_007605.1 + 115385 0.66 0.664593
Target:  5'- cUCUG-CUCCCCUCUaUUCUCCUcuugCGUUa -3'
miRNA:   3'- -AGACgGAGGGGAGG-GAGAGGGa---GCAG- -5'
33508 3' -61.6 NC_007605.1 + 18086 0.66 0.664593
Target:  5'- --aGCCUCCUCUCCCaccggCCCUUccaagaGUCa -3'
miRNA:   3'- agaCGGAGGGGAGGGaga--GGGAG------CAG- -5'
33508 3' -61.6 NC_007605.1 + 63629 0.66 0.664593
Target:  5'- --cGCCUCCCCUCgUUC-CCC-CGa- -3'
miRNA:   3'- agaCGGAGGGGAGgGAGaGGGaGCag -5'
33508 3' -61.6 NC_007605.1 + 46567 0.66 0.664593
Target:  5'- --aGaCCUCCCCccaucUCCCUCUUaCCUUGUg -3'
miRNA:   3'- agaC-GGAGGGG-----AGGGAGAG-GGAGCAg -5'
33508 3' -61.6 NC_007605.1 + 135787 0.67 0.654814
Target:  5'- --cGCCUgCCCCUCCCUCgagaaCCCa---- -3'
miRNA:   3'- agaCGGA-GGGGAGGGAGa----GGGagcag -5'
33508 3' -61.6 NC_007605.1 + 153007 0.67 0.635213
Target:  5'- gUCUGCuCUCgCCgCUCUCUUCuCUCGUUu -3'
miRNA:   3'- -AGACG-GAGgGGaGGGAGAGG-GAGCAG- -5'
33508 3' -61.6 NC_007605.1 + 75298 0.67 0.635213
Target:  5'- ---cCCUCCCCUgUCUC-CCCUCGa- -3'
miRNA:   3'- agacGGAGGGGAgGGAGaGGGAGCag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.