miRNA display CGI


Results 1 - 20 of 156 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33508 5' -54.4 NC_007605.1 + 73106 0.66 0.96222
Target:  5'- aCUGGGGuguAGGAGAGGGcccuggugAGAcacGUGucuGGGAGg -3'
miRNA:   3'- -GACUCC---UCCUCUUCC--------UCU---UAC---CCCUC- -5'
33508 5' -54.4 NC_007605.1 + 160450 0.66 0.96222
Target:  5'- aCUGAGGGGGuac-GGAGAGgcGGGAc -3'
miRNA:   3'- -GACUCCUCCucuuCCUCUUacCCCUc -5'
33508 5' -54.4 NC_007605.1 + 135759 0.66 0.96222
Target:  5'- -aGAGaGGGuAGGAGGAuuuUGGGGGGa -3'
miRNA:   3'- gaCUCcUCC-UCUUCCUcuuACCCCUC- -5'
33508 5' -54.4 NC_007605.1 + 53872 0.66 0.96222
Target:  5'- -aGAGGAccGGAucGAAGGAGAcuggAUGGuguuGGAGa -3'
miRNA:   3'- gaCUCCU--CCU--CUUCCUCU----UACC----CCUC- -5'
33508 5' -54.4 NC_007605.1 + 117514 0.66 0.958649
Target:  5'- -gGAGGAGGuGAAGGuAGccGUGGaGGGc -3'
miRNA:   3'- gaCUCCUCCuCUUCC-UCu-UACC-CCUc -5'
33508 5' -54.4 NC_007605.1 + 165887 0.66 0.958649
Target:  5'- uCUGAGGAGGGcuGGGcccGGGGcuagGGGGAc -3'
miRNA:   3'- -GACUCCUCCUcuUCC---UCUUa---CCCCUc -5'
33508 5' -54.4 NC_007605.1 + 40283 0.66 0.957534
Target:  5'- -gGGGGAGGAccgcggccGAgccaccaggggcccGGcGGGggUGGGGGGu -3'
miRNA:   3'- gaCUCCUCCU--------CU--------------UC-CUCuuACCCCUC- -5'
33508 5' -54.4 NC_007605.1 + 1573 0.66 0.954852
Target:  5'- -cGGGGGGGcuGGGGGGccGcgGGGGAa -3'
miRNA:   3'- gaCUCCUCCucUUCCUC--UuaCCCCUc -5'
33508 5' -54.4 NC_007605.1 + 2110 0.66 0.954852
Target:  5'- -cGGGGGGGcuGGGGGGccGcgGGGGAa -3'
miRNA:   3'- gaCUCCUCCucUUCCUC--UuaCCCCUc -5'
33508 5' -54.4 NC_007605.1 + 513 0.66 0.954852
Target:  5'- -cGGGGGGGcuGGGGGGccGcgGGGGAa -3'
miRNA:   3'- gaCUCCUCCucUUCCUC--UuaCCCCUc -5'
33508 5' -54.4 NC_007605.1 + 1050 0.66 0.954852
Target:  5'- -cGGGGGGGcuGGGGGGccGcgGGGGAa -3'
miRNA:   3'- gaCUCCUCCucUUCCUC--UuaCCCCUc -5'
33508 5' -54.4 NC_007605.1 + 38295 0.66 0.950826
Target:  5'- gCUGGGGAuGGGGAGGGcggggcuggcgcAGAgcgcccucccGUGGaGGGGg -3'
miRNA:   3'- -GACUCCU-CCUCUUCC------------UCU----------UACC-CCUC- -5'
33508 5' -54.4 NC_007605.1 + 151791 0.66 0.946566
Target:  5'- -cGAGGcAGGcuuacauGGGAGucuAUGGGGAGc -3'
miRNA:   3'- gaCUCC-UCCucu----UCCUCu--UACCCCUC- -5'
33508 5' -54.4 NC_007605.1 + 96580 0.66 0.946566
Target:  5'- -cGAGGAGGuAGu-GGAGGccGGGGu- -3'
miRNA:   3'- gaCUCCUCC-UCuuCCUCUuaCCCCuc -5'
33508 5' -54.4 NC_007605.1 + 96556 0.66 0.946566
Target:  5'- -cGAGGAGGcAGu-GGAGGccGGGGu- -3'
miRNA:   3'- gaCUCCUCC-UCuuCCUCUuaCCCCuc -5'
33508 5' -54.4 NC_007605.1 + 145654 0.66 0.946566
Target:  5'- -cGAGGcAGGcuuacauGGGAGucuAUGGGGAGc -3'
miRNA:   3'- gaCUCC-UCCucu----UCCUCu--UACCCCUC- -5'
33508 5' -54.4 NC_007605.1 + 148722 0.66 0.946566
Target:  5'- -cGAGGcAGGcuuacauGGGAGucuAUGGGGAGc -3'
miRNA:   3'- gaCUCC-UCCucu----UCCUCu--UACCCCUC- -5'
33508 5' -54.4 NC_007605.1 + 136447 0.66 0.946566
Target:  5'- -cGAGGcAGGcuuacauGGGAGucuAUGGGGAGc -3'
miRNA:   3'- gaCUCC-UCCucu----UCCUCu--UACCCCUC- -5'
33508 5' -54.4 NC_007605.1 + 157929 0.66 0.946566
Target:  5'- -cGAGGcAGGcuuacauGGGAGucuAUGGGGAGc -3'
miRNA:   3'- gaCUCC-UCCucu----UCCUCu--UACCCCUC- -5'
33508 5' -54.4 NC_007605.1 + 142585 0.66 0.946566
Target:  5'- -cGAGGcAGGcuuacauGGGAGucuAUGGGGAGc -3'
miRNA:   3'- gaCUCC-UCCucu----UCCUCu--UACCCCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.