miRNA display CGI


Results 1 - 20 of 57 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33513 5' -62.5 NC_007605.1 + 21545 0.66 0.683804
Target:  5'- aGC-CUCCGCCGCCUgCgGCcCACuGAa -3'
miRNA:   3'- cCGaGGGGCGGCGGAgGaCGuGUG-CU- -5'
33513 5' -62.5 NC_007605.1 + 157399 0.66 0.683804
Target:  5'- cGUUCCCCGCauccCGCCUCCgacGCcucagaACGGc -3'
miRNA:   3'- cCGAGGGGCG----GCGGAGGa--CGug----UGCU- -5'
33513 5' -62.5 NC_007605.1 + 54736 0.66 0.683804
Target:  5'- uGGCUaCUgCCGCCGCUg-CUGC-CGCGGc -3'
miRNA:   3'- -CCGA-GG-GGCGGCGGagGACGuGUGCU- -5'
33513 5' -62.5 NC_007605.1 + 159533 0.66 0.678037
Target:  5'- gGGCUCuCCCGggaCGCCUCCUccucGCcucggcccaaccgcuGCAUGGc -3'
miRNA:   3'- -CCGAG-GGGCg--GCGGAGGA----CG---------------UGUGCU- -5'
33513 5' -62.5 NC_007605.1 + 14206 0.66 0.674185
Target:  5'- aGCacCCCCGCCGCCgUUCUGagGCGuCGGa -3'
miRNA:   3'- cCGa-GGGGCGGCGG-AGGACg-UGU-GCU- -5'
33513 5' -62.5 NC_007605.1 + 16282 0.66 0.664536
Target:  5'- cGCgccaUCCC-CCGCCUCCaGCAC-CGGg -3'
miRNA:   3'- cCGa---GGGGcGGCGGAGGaCGUGuGCU- -5'
33513 5' -62.5 NC_007605.1 + 59306 0.66 0.664536
Target:  5'- gGGC-CgCCGCCGCCgCUUGCcCGCc- -3'
miRNA:   3'- -CCGaGgGGCGGCGGaGGACGuGUGcu -5'
33513 5' -62.5 NC_007605.1 + 46798 0.66 0.653894
Target:  5'- cGCUUCCUggagacggcacugGCCGUgUCCUGUgugaACACGGa -3'
miRNA:   3'- cCGAGGGG-------------CGGCGgAGGACG----UGUGCU- -5'
33513 5' -62.5 NC_007605.1 + 111 0.66 0.645173
Target:  5'- cGGCUa-UUGCCGCCUCgUGUuuCACGGc -3'
miRNA:   3'- -CCGAggGGCGGCGGAGgACGu-GUGCU- -5'
33513 5' -62.5 NC_007605.1 + 110632 0.66 0.645173
Target:  5'- cGCUCUCUgGCCGC--CCUGCGCugGc -3'
miRNA:   3'- cCGAGGGG-CGGCGgaGGACGUGugCu -5'
33513 5' -62.5 NC_007605.1 + 65792 0.66 0.635474
Target:  5'- gGGCUCUacgccuuccuCCGCaguaucuaUGCCUCCUGCuACGCc- -3'
miRNA:   3'- -CCGAGG----------GGCG--------GCGGAGGACG-UGUGcu -5'
33513 5' -62.5 NC_007605.1 + 121286 0.66 0.635474
Target:  5'- cGCggCCCCGCCGUCggCUGCaucuccgccGCGCGu -3'
miRNA:   3'- cCGa-GGGGCGGCGGagGACG---------UGUGCu -5'
33513 5' -62.5 NC_007605.1 + 111876 0.67 0.625773
Target:  5'- cGGUU-CUCGCCGCCUUUgcuCGCACGGc -3'
miRNA:   3'- -CCGAgGGGCGGCGGAGGac-GUGUGCU- -5'
33513 5' -62.5 NC_007605.1 + 115030 0.67 0.606391
Target:  5'- aGGcCUgCCUGCCGUC-CCUGgC-CACGAa -3'
miRNA:   3'- -CC-GAgGGGCGGCGGaGGAC-GuGUGCU- -5'
33513 5' -62.5 NC_007605.1 + 105477 0.67 0.606391
Target:  5'- -cCUCCCuCGCCGCCUUCccgcgUGCAaacgugGCGAg -3'
miRNA:   3'- ccGAGGG-GCGGCGGAGG-----ACGUg-----UGCU- -5'
33513 5' -62.5 NC_007605.1 + 119022 0.67 0.606391
Target:  5'- cGGCcuaCgCUGCCGCCuUCCUGgGCGCc- -3'
miRNA:   3'- -CCGa--GgGGCGGCGG-AGGACgUGUGcu -5'
33513 5' -62.5 NC_007605.1 + 134680 0.67 0.600587
Target:  5'- uGGcCUCCCCgGUgGCCccaagcugagccaguUCCUcGCACugGAg -3'
miRNA:   3'- -CC-GAGGGG-CGgCGG---------------AGGA-CGUGugCU- -5'
33513 5' -62.5 NC_007605.1 + 85556 0.67 0.600587
Target:  5'- gGGUUCCCCaacggccaugGCCGCCUCagcggugacacagGCACccACGGa -3'
miRNA:   3'- -CCGAGGGG----------CGGCGGAGga-----------CGUG--UGCU- -5'
33513 5' -62.5 NC_007605.1 + 65190 0.67 0.596722
Target:  5'- gGGCgaggCCaugaaCGCCGCCaaCCUGUGCGcCGAg -3'
miRNA:   3'- -CCGa---GGg----GCGGCGGa-GGACGUGU-GCU- -5'
33513 5' -62.5 NC_007605.1 + 162805 0.67 0.577462
Target:  5'- cGGCcgcCCCCGCCacguagcugcccGUCUCCgGCAC-CGGg -3'
miRNA:   3'- -CCGa--GGGGCGG------------CGGAGGaCGUGuGCU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.