Results 21 - 40 of 57 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33513 | 5' | -62.5 | NC_007605.1 | + | 54494 | 0.68 | 0.571708 |
Target: 5'- cGCUCCUCGCCcuCCUCCUccuucuuuggcgguaGC-CGCGGg -3' miRNA: 3'- cCGAGGGGCGGc-GGAGGA---------------CGuGUGCU- -5' |
|||||||
33513 | 5' | -62.5 | NC_007605.1 | + | 159916 | 0.68 | 0.557389 |
Target: 5'- aGCUCCgagagcuCCGCCaCCUCCggggGCACuguCGAg -3' miRNA: 3'- cCGAGG-------GGCGGcGGAGGa---CGUGu--GCU- -5' |
|||||||
33513 | 5' | -62.5 | NC_007605.1 | + | 113422 | 0.68 | 0.548846 |
Target: 5'- -aUUCCCUGCCGCCagguauagUCCUGCAaa-GAc -3' miRNA: 3'- ccGAGGGGCGGCGG--------AGGACGUgugCU- -5' |
|||||||
33513 | 5' | -62.5 | NC_007605.1 | + | 111144 | 0.68 | 0.548846 |
Target: 5'- aGGCUgugcUCCCGCC-CgCUCCUGUACgACGc -3' miRNA: 3'- -CCGA----GGGGCGGcG-GAGGACGUG-UGCu -5' |
|||||||
33513 | 5' | -62.5 | NC_007605.1 | + | 1269 | 0.68 | 0.548846 |
Target: 5'- cGCUCCCCGCC-CC-CCUugggggcuugGCugGCGc -3' miRNA: 3'- cCGAGGGGCGGcGGaGGA----------CGugUGCu -5' |
|||||||
33513 | 5' | -62.5 | NC_007605.1 | + | 209 | 0.68 | 0.548846 |
Target: 5'- cGCUCCCCGCC-CC-CCUugggggcuugGCugGCGc -3' miRNA: 3'- cCGAGGGGCGGcGGaGGA----------CGugUGCu -5' |
|||||||
33513 | 5' | -62.5 | NC_007605.1 | + | 747 | 0.68 | 0.548846 |
Target: 5'- cGCUCCCCGCC-CC-CCUugggggcuugGCugGCGc -3' miRNA: 3'- cCGAGGGGCGGcGGaGGA----------CGugUGCu -5' |
|||||||
33513 | 5' | -62.5 | NC_007605.1 | + | 49597 | 0.68 | 0.548846 |
Target: 5'- gGGCgacUgCCGCCGCCUCCgccGC-CGCa- -3' miRNA: 3'- -CCGa--GgGGCGGCGGAGGa--CGuGUGcu -5' |
|||||||
33513 | 5' | -62.5 | NC_007605.1 | + | 1807 | 0.68 | 0.548846 |
Target: 5'- cGCUCCCCGCC-CC-CCUugggggcuugGCugGCGc -3' miRNA: 3'- cCGAGGGGCGGcGGaGGA----------CGugUGCu -5' |
|||||||
33513 | 5' | -62.5 | NC_007605.1 | + | 117784 | 0.68 | 0.530015 |
Target: 5'- aGGCUCCCCucgagGCCGCCcuggCCcGgGCAgCGGc -3' miRNA: 3'- -CCGAGGGG-----CGGCGGa---GGaCgUGU-GCU- -5' |
|||||||
33513 | 5' | -62.5 | NC_007605.1 | + | 110189 | 0.68 | 0.530015 |
Target: 5'- cGC-CCgCCGCCGCC-CCcGC-CGCGAc -3' miRNA: 3'- cCGaGG-GGCGGCGGaGGaCGuGUGCU- -5' |
|||||||
33513 | 5' | -62.5 | NC_007605.1 | + | 148767 | 0.68 | 0.52721 |
Target: 5'- cGCUCCCCGCauuccugcuuucggCGCC-CCUGCGgAuccCGAu -3' miRNA: 3'- cCGAGGGGCG--------------GCGGaGGACGUgU---GCU- -5' |
|||||||
33513 | 5' | -62.5 | NC_007605.1 | + | 115223 | 0.68 | 0.520688 |
Target: 5'- cGGC-CUCCGCCGCCUUCcccaccgGCGCugcccCGGa -3' miRNA: 3'- -CCGaGGGGCGGCGGAGGa------CGUGu----GCU- -5' |
|||||||
33513 | 5' | -62.5 | NC_007605.1 | + | 140352 | 0.69 | 0.502232 |
Target: 5'- ---cCCCCGCC-UCUCCUGC-CAUGAg -3' miRNA: 3'- ccgaGGGGCGGcGGAGGACGuGUGCU- -5' |
|||||||
33513 | 5' | -62.5 | NC_007605.1 | + | 131956 | 0.69 | 0.502232 |
Target: 5'- cGGCUCguggagUCCGCaccuCCUUCUGUGCACGAa -3' miRNA: 3'- -CCGAG------GGGCGgc--GGAGGACGUGUGCU- -5' |
|||||||
33513 | 5' | -62.5 | NC_007605.1 | + | 100740 | 0.69 | 0.493112 |
Target: 5'- cGGUUCCCCGCgcggcaCGCC-CCUGC-C-CGGc -3' miRNA: 3'- -CCGAGGGGCG------GCGGaGGACGuGuGCU- -5' |
|||||||
33513 | 5' | -62.5 | NC_007605.1 | + | 62403 | 0.69 | 0.467109 |
Target: 5'- -cCUCCCCGCUGCCcucuucgaugaugcgCCgGUACGCGGc -3' miRNA: 3'- ccGAGGGGCGGCGGa--------------GGaCGUGUGCU- -5' |
|||||||
33513 | 5' | -62.5 | NC_007605.1 | + | 111070 | 0.69 | 0.466225 |
Target: 5'- uGGC-CaCCCGCCGCUUUCUGguCuCGGg -3' miRNA: 3'- -CCGaG-GGGCGGCGGAGGACguGuGCU- -5' |
|||||||
33513 | 5' | -62.5 | NC_007605.1 | + | 8629 | 0.69 | 0.465342 |
Target: 5'- uGGgaCCCCuGCCGCCgacCCUGCuucucggGCugGGg -3' miRNA: 3'- -CCgaGGGG-CGGCGGa--GGACG-------UGugCU- -5' |
|||||||
33513 | 5' | -62.5 | NC_007605.1 | + | 56144 | 0.69 | 0.456558 |
Target: 5'- aGGCcaccuugUCCCUGauguCCGCCguacaCCUGCGCACGu -3' miRNA: 3'- -CCG-------AGGGGC----GGCGGa----GGACGUGUGCu -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home