miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33513 5' -62.5 NC_007605.1 + 65190 0.67 0.596722
Target:  5'- gGGCgaggCCaugaaCGCCGCCaaCCUGUGCGcCGAg -3'
miRNA:   3'- -CCGa---GGg----GCGGCGGa-GGACGUGU-GCU- -5'
33513 5' -62.5 NC_007605.1 + 131956 0.69 0.502232
Target:  5'- cGGCUCguggagUCCGCaccuCCUUCUGUGCACGAa -3'
miRNA:   3'- -CCGAG------GGGCGgc--GGAGGACGUGUGCU- -5'
33513 5' -62.5 NC_007605.1 + 140352 0.69 0.502232
Target:  5'- ---cCCCCGCC-UCUCCUGC-CAUGAg -3'
miRNA:   3'- ccgaGGGGCGGcGGAGGACGuGUGCU- -5'
33513 5' -62.5 NC_007605.1 + 115223 0.68 0.520688
Target:  5'- cGGC-CUCCGCCGCCUUCcccaccgGCGCugcccCGGa -3'
miRNA:   3'- -CCGaGGGGCGGCGGAGGa------CGUGu----GCU- -5'
33513 5' -62.5 NC_007605.1 + 148767 0.68 0.52721
Target:  5'- cGCUCCCCGCauuccugcuuucggCGCC-CCUGCGgAuccCGAu -3'
miRNA:   3'- cCGAGGGGCG--------------GCGGaGGACGUgU---GCU- -5'
33513 5' -62.5 NC_007605.1 + 49597 0.68 0.548846
Target:  5'- gGGCgacUgCCGCCGCCUCCgccGC-CGCa- -3'
miRNA:   3'- -CCGa--GgGGCGGCGGAGGa--CGuGUGcu -5'
33513 5' -62.5 NC_007605.1 + 159916 0.68 0.557389
Target:  5'- aGCUCCgagagcuCCGCCaCCUCCggggGCACuguCGAg -3'
miRNA:   3'- cCGAGG-------GGCGGcGGAGGa---CGUGu--GCU- -5'
33513 5' -62.5 NC_007605.1 + 54494 0.68 0.571708
Target:  5'- cGCUCCUCGCCcuCCUCCUccuucuuuggcgguaGC-CGCGGg -3'
miRNA:   3'- cCGAGGGGCGGc-GGAGGA---------------CGuGUGCU- -5'
33513 5' -62.5 NC_007605.1 + 162805 0.67 0.577462
Target:  5'- cGGCcgcCCCCGCCacguagcugcccGUCUCCgGCAC-CGGg -3'
miRNA:   3'- -CCGa--GGGGCGG------------CGGAGGaCGUGuGCU- -5'
33513 5' -62.5 NC_007605.1 + 100740 0.69 0.493112
Target:  5'- cGGUUCCCCGCgcggcaCGCC-CCUGC-C-CGGc -3'
miRNA:   3'- -CCGAGGGGCG------GCGGaGGACGuGuGCU- -5'
33513 5' -62.5 NC_007605.1 + 62403 0.69 0.467109
Target:  5'- -cCUCCCCGCUGCCcucuucgaugaugcgCCgGUACGCGGc -3'
miRNA:   3'- ccGAGGGGCGGCGGa--------------GGaCGUGUGCU- -5'
33513 5' -62.5 NC_007605.1 + 56144 0.69 0.456558
Target:  5'- aGGCcaccuugUCCCUGauguCCGCCguacaCCUGCGCACGu -3'
miRNA:   3'- -CCG-------AGGGGC----GGCGGa----GGACGUGUGCu -5'
33513 5' -62.5 NC_007605.1 + 58330 0.83 0.061339
Target:  5'- gGGCgUCCCCGCCGCCUCCccauCACugGAc -3'
miRNA:   3'- -CCG-AGGGGCGGCGGAGGac--GUGugCU- -5'
33513 5' -62.5 NC_007605.1 + 87822 0.77 0.150896
Target:  5'- gGGCUCCugCCGCgggGCCUCCUGC-CGCGGg -3'
miRNA:   3'- -CCGAGG--GGCGg--CGGAGGACGuGUGCU- -5'
33513 5' -62.5 NC_007605.1 + 87747 0.74 0.236599
Target:  5'- gGGCcUCCUGCCgugggGCCUCCUGC-CGCGGg -3'
miRNA:   3'- -CCGaGGGGCGG-----CGGAGGACGuGUGCU- -5'
33513 5' -62.5 NC_007605.1 + 87777 0.74 0.236599
Target:  5'- gGGCcUCCUGCCgcgggGCCUCCUGC-CGCGGg -3'
miRNA:   3'- -CCGaGGGGCGG-----CGGAGGACGuGUGCU- -5'
33513 5' -62.5 NC_007605.1 + 61987 0.71 0.359544
Target:  5'- gGGCguuugucCCCCGCUgGCCUCCgcGUACACGc -3'
miRNA:   3'- -CCGa------GGGGCGG-CGGAGGa-CGUGUGCu -5'
33513 5' -62.5 NC_007605.1 + 87864 0.71 0.382613
Target:  5'- uGGCgccucUUUCCGCUggGCCUCCUGC-CGCGGg -3'
miRNA:   3'- -CCG-----AGGGGCGG--CGGAGGACGuGUGCU- -5'
33513 5' -62.5 NC_007605.1 + 60772 0.71 0.398529
Target:  5'- gGGC-CCCCGCCcucuucGUCUUCUGCACccuCGGc -3'
miRNA:   3'- -CCGaGGGGCGG------CGGAGGACGUGu--GCU- -5'
33513 5' -62.5 NC_007605.1 + 159771 0.7 0.440118
Target:  5'- uGC-CCCCGCCagcGCCUCCUcGCAgGCc- -3'
miRNA:   3'- cCGaGGGGCGG---CGGAGGA-CGUgUGcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.