miRNA display CGI


Results 1 - 20 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33515 3' -58.7 NC_007605.1 + 129545 0.66 0.819063
Target:  5'- cGUGg-CCAUCAGCaUgGCGGCCAa- -3'
miRNA:   3'- aCACgaGGUGGUCGaGgUGCCGGUac -5'
33515 3' -58.7 NC_007605.1 + 120948 0.66 0.819063
Target:  5'- cGgccCUCCGCCAcccGCcuccCCACGGCCGUc -3'
miRNA:   3'- aCac-GAGGUGGU---CGa---GGUGCCGGUAc -5'
33515 3' -58.7 NC_007605.1 + 30995 0.66 0.819063
Target:  5'- gGUGggCCACCcggccgcccccgAGCUCCAgGGCUg-- -3'
miRNA:   3'- aCACgaGGUGG------------UCGAGGUgCCGGuac -5'
33515 3' -58.7 NC_007605.1 + 160520 0.66 0.819063
Target:  5'- -uUGCUCCACCucuaaGGUcCCACggGGCCAc- -3'
miRNA:   3'- acACGAGGUGG-----UCGaGGUG--CCGGUac -5'
33515 3' -58.7 NC_007605.1 + 163443 0.66 0.819063
Target:  5'- --aGCUCCACCAGCUugcCCACccGUCGg- -3'
miRNA:   3'- acaCGAGGUGGUCGA---GGUGc-CGGUac -5'
33515 3' -58.7 NC_007605.1 + 112414 0.66 0.810496
Target:  5'- cGU-CUCCACCAGCUUaaauugcuCGGgCGUGu -3'
miRNA:   3'- aCAcGAGGUGGUCGAGgu------GCCgGUAC- -5'
33515 3' -58.7 NC_007605.1 + 122093 0.66 0.810496
Target:  5'- -cUGCUCUgGCCGGUugaaggcuUCCACGGCCc-- -3'
miRNA:   3'- acACGAGG-UGGUCG--------AGGUGCCGGuac -5'
33515 3' -58.7 NC_007605.1 + 41165 0.66 0.801773
Target:  5'- -aUGCU-CGCCAcUUCCugGGUCAUGa -3'
miRNA:   3'- acACGAgGUGGUcGAGGugCCGGUAC- -5'
33515 3' -58.7 NC_007605.1 + 143981 0.66 0.801773
Target:  5'- -aUGCU-CGCCAcUUCCugGGUCAUGa -3'
miRNA:   3'- acACGAgGUGGUcGAGGugCCGGUAC- -5'
33515 3' -58.7 NC_007605.1 + 111877 0.66 0.801773
Target:  5'- gGUuCUcgCCGCCuuuGCUCgCACGGCCcgGg -3'
miRNA:   3'- aCAcGA--GGUGGu--CGAG-GUGCCGGuaC- -5'
33515 3' -58.7 NC_007605.1 + 86058 0.66 0.801773
Target:  5'- cUGUGUcaCCGCUgaGGCggCCAUGGCCGUu -3'
miRNA:   3'- -ACACGa-GGUGG--UCGa-GGUGCCGGUAc -5'
33515 3' -58.7 NC_007605.1 + 134811 0.66 0.7929
Target:  5'- cGUGCcaggCCGCCAuGCUC-AgGGCCAc- -3'
miRNA:   3'- aCACGa---GGUGGU-CGAGgUgCCGGUac -5'
33515 3' -58.7 NC_007605.1 + 102622 0.66 0.7929
Target:  5'- -aUGCcaagaUCUGCCAGCUCCugaacACGGCCc-- -3'
miRNA:   3'- acACG-----AGGUGGUCGAGG-----UGCCGGuac -5'
33515 3' -58.7 NC_007605.1 + 110787 0.66 0.789311
Target:  5'- cGUGCaggccgacagguagUCCACCagGGCcuuguccugcccaUCCuCGGCCGUGg -3'
miRNA:   3'- aCACG--------------AGGUGG--UCG-------------AGGuGCCGGUAC- -5'
33515 3' -58.7 NC_007605.1 + 48748 0.66 0.783886
Target:  5'- aUGUGCUgacCUGCCAuGC-CaGCGGCCGUGu -3'
miRNA:   3'- -ACACGA---GGUGGU-CGaGgUGCCGGUAC- -5'
33515 3' -58.7 NC_007605.1 + 24414 0.66 0.783886
Target:  5'- aGUGCaCCacaGCCAaCUCCAUGGUUAUGu -3'
miRNA:   3'- aCACGaGG---UGGUcGAGGUGCCGGUAC- -5'
33515 3' -58.7 NC_007605.1 + 111324 0.66 0.783886
Target:  5'- gUGUGCcgggacgccgCCGCCAGgUgggcccuggCCACGGCCGa- -3'
miRNA:   3'- -ACACGa---------GGUGGUCgA---------GGUGCCGGUac -5'
33515 3' -58.7 NC_007605.1 + 10770 0.66 0.774739
Target:  5'- -aUGCcccCCACCAGUcaCC-CGGCCGUGu -3'
miRNA:   3'- acACGa--GGUGGUCGa-GGuGCCGGUAC- -5'
33515 3' -58.7 NC_007605.1 + 163955 0.66 0.774739
Target:  5'- -aUGCUgaagcCCGGCUCCACGGUgAUGc -3'
miRNA:   3'- acACGAggu--GGUCGAGGUGCCGgUAC- -5'
33515 3' -58.7 NC_007605.1 + 15671 0.67 0.765469
Target:  5'- cUGUGCuUCUACCaAGaCUCCcugACGGUgGUGg -3'
miRNA:   3'- -ACACG-AGGUGG-UC-GAGG---UGCCGgUAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.