miRNA display CGI


Results 21 - 40 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33515 3' -58.7 NC_007605.1 + 15671 0.67 0.765469
Target:  5'- cUGUGCuUCUACCaAGaCUCCcugACGGUgGUGg -3'
miRNA:   3'- -ACACG-AGGUGG-UC-GAGG---UGCCGgUAC- -5'
33515 3' -58.7 NC_007605.1 + 56615 0.67 0.765469
Target:  5'- --gGCaggCCuCCAGCUuuGCGGCCAg- -3'
miRNA:   3'- acaCGa--GGuGGUCGAggUGCCGGUac -5'
33515 3' -58.7 NC_007605.1 + 37230 0.67 0.756084
Target:  5'- -cUGCccaUCCAucaacuUCAGCUCCAgGGCCAg- -3'
miRNA:   3'- acACG---AGGU------GGUCGAGGUgCCGGUac -5'
33515 3' -58.7 NC_007605.1 + 39118 0.67 0.746592
Target:  5'- -cUGCgccgCCGCCAGgUCCugGGgCAg- -3'
miRNA:   3'- acACGa---GGUGGUCgAGGugCCgGUac -5'
33515 3' -58.7 NC_007605.1 + 39368 0.67 0.746592
Target:  5'- -cUGCgccgCCGCCAGgUCCugGGgCAg- -3'
miRNA:   3'- acACGa---GGUGGUCgAGGugCCgGUac -5'
33515 3' -58.7 NC_007605.1 + 113542 0.67 0.746592
Target:  5'- --cGCggCC-CCGGcCUCCGCGGCCccGg -3'
miRNA:   3'- acaCGa-GGuGGUC-GAGGUGCCGGuaC- -5'
33515 3' -58.7 NC_007605.1 + 113572 0.67 0.746592
Target:  5'- --cGCggCC-CCGGcCUCCGCGGCCccGg -3'
miRNA:   3'- acaCGa-GGuGGUC-GAGGUGCCGGuaC- -5'
33515 3' -58.7 NC_007605.1 + 38744 0.67 0.746592
Target:  5'- -cUGCgccgCCGCCAGgUCCugGGgCAg- -3'
miRNA:   3'- acACGa---GGUGGUCgAGGugCCgGUac -5'
33515 3' -58.7 NC_007605.1 + 38369 0.67 0.746592
Target:  5'- -cUGCgccgCCGCCAGgUCCugGGgCAg- -3'
miRNA:   3'- acACGa---GGUGGUCgAGGugCCgGUac -5'
33515 3' -58.7 NC_007605.1 + 38494 0.67 0.746592
Target:  5'- -cUGCgccgCCGCCAGgUCCugGGgCAg- -3'
miRNA:   3'- acACGa---GGUGGUCgAGGugCCgGUac -5'
33515 3' -58.7 NC_007605.1 + 38619 0.67 0.746592
Target:  5'- -cUGCgccgCCGCCAGgUCCugGGgCAg- -3'
miRNA:   3'- acACGa---GGUGGUCgAGGugCCgGUac -5'
33515 3' -58.7 NC_007605.1 + 38869 0.67 0.746592
Target:  5'- -cUGCgccgCCGCCAGgUCCugGGgCAg- -3'
miRNA:   3'- acACGa---GGUGGUCgAGGugCCgGUac -5'
33515 3' -58.7 NC_007605.1 + 54584 0.67 0.746592
Target:  5'- cGUGaaCCAgCCgGGUUCCGCGGCCu-- -3'
miRNA:   3'- aCACgaGGU-GG-UCGAGGUGCCGGuac -5'
33515 3' -58.7 NC_007605.1 + 39743 0.67 0.746592
Target:  5'- -cUGCgccgCCGCCAGgUCCugGGgCAg- -3'
miRNA:   3'- acACGa---GGUGGUCgAGGugCCgGUac -5'
33515 3' -58.7 NC_007605.1 + 38993 0.67 0.746592
Target:  5'- -cUGCgccgCCGCCAGgUCCugGGgCAg- -3'
miRNA:   3'- acACGa---GGUGGUCgAGGugCCgGUac -5'
33515 3' -58.7 NC_007605.1 + 39493 0.67 0.746592
Target:  5'- -cUGCgccgCCGCCAGgUCCugGGgCAg- -3'
miRNA:   3'- acACGa---GGUGGUCgAGGugCCgGUac -5'
33515 3' -58.7 NC_007605.1 + 39243 0.67 0.746592
Target:  5'- -cUGCgccgCCGCCAGgUCCugGGgCAg- -3'
miRNA:   3'- acACGa---GGUGGUCgAGGugCCgGUac -5'
33515 3' -58.7 NC_007605.1 + 39618 0.67 0.746592
Target:  5'- -cUGCgccgCCGCCAGgUCCugGGgCAg- -3'
miRNA:   3'- acACGa---GGUGGUCgAGGugCCgGUac -5'
33515 3' -58.7 NC_007605.1 + 99584 0.67 0.727324
Target:  5'- aGUGCUUCGCCGGUcgCUguGgGGCCAa- -3'
miRNA:   3'- aCACGAGGUGGUCGa-GG--UgCCGGUac -5'
33515 3' -58.7 NC_007605.1 + 162105 0.67 0.727324
Target:  5'- -aUGCaCCACCuuGGcCUCCuuGGCCGUGa -3'
miRNA:   3'- acACGaGGUGG--UC-GAGGugCCGGUAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.